Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.0e-30 136.0 62 100.0
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 3.2e-24 114.4 52 98.1
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 3.2e-24 114.4 52 98.1
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 5.4e-24 113.6 51 100.0
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 1.6e-23 112.1 51 96.1
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 7.8e-23 109.8 61 82.0
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 1.0e-22 109.4 51 92.2
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 2.3e-22 108.2 61 80.3
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 2.3e-22 108.2 61 80.3
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 6.6e-22 106.7 52 90.4
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 8.6e-22 106.3 52 86.5
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 3.3e-21 104.4 52 84.6
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 3.3e-21 104.4 52 86.5
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 3.3e-21 104.4 52 84.6
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 3.3e-21 104.4 52 84.6
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 3.3e-21 104.4 52 84.6
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 3.3e-21 104.4 52 84.6
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 3.3e-21 104.4 52 84.6
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 4.3e-21 104.0 52 86.5
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 4.3e-21 104.0 52 86.5
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 4.3e-21 104.0 52 86.5
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 4.3e-21 104.0 52 86.5
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 5.6e-21 103.6 51 86.3
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 7.3e-21 103.2 51 88.2
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 7.3e-21 103.2 51 88.2
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 7.3e-21 103.2 52 84.6
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 7.3e-21 103.2 52 84.6
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 7.3e-21 103.2 52 86.5
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 9.5e-21 102.8 52 84.6
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 9.5e-21 102.8 52 86.5
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 9.5e-21 102.8 52 84.6
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 9.5e-21 102.8 52 84.6
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 1.2e-20 102.4 61 73.8
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 84.6
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 80.8
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 80.8
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 1.2e-20 102.4 52 80.8
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 1.6e-20 102.1 52 84.6
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 1.6e-20 102.1 51 86.3
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 1.6e-20 102.1 51 88.2
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 1.6e-20 102.1 52 82.7
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 1.6e-20 102.1 51 86.3
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 1.6e-20 102.1 52 84.6
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 1.6e-20 102.1 52 84.6
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.6e-20 102.1 52 84.6
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 1.6e-20 102.1 51 84.3
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 2.1e-20 101.7 51 86.3
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 2.1e-20 101.7 52 82.7
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 2.1e-20 101.7 52 82.7
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 2.1e-20 101.7 52 82.7
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 2.1e-20 101.7 52 82.7
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 2.1e-20 101.7 51 88.2
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 2.1e-20 101.7 52 82.7
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 2.8e-20 101.3 52 82.7
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 2.8e-20 101.3 51 86.3
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 2.8e-20 101.3 52 82.7
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 2.8e-20 101.3 52 82.7
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 2.8e-20 101.3 52 80.8
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 2.8e-20 101.3 52 82.7
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 2.8e-20 101.3 52 82.7
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 3.6e-20 100.9 52 82.7
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 3.6e-20 100.9 52 82.7
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 3.6e-20 100.9 52 82.7
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 3.6e-20 100.9 52 84.6
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 3.6e-20 100.9 52 80.8
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.6e-20 100.9 52 80.8
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 3.6e-20 100.9 52 80.8
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 3.6e-20 100.9 51 84.3
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 4.7e-20 100.5 52 82.7
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 4.7e-20 100.5 61 72.1
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 4.7e-20 100.5 61 72.1
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 4.7e-20 100.5 52 80.8
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 4.7e-20 100.5 52 80.8
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 4.7e-20 100.5 52 80.8
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 4.7e-20 100.5 52 80.8
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 4.7e-20 100.5 52 80.8
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 6.2e-20 100.1 52 82.7
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 6.2e-20 100.1 52 82.7
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 6.2e-20 100.1 52 82.7
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 6.2e-20 100.1 52 82.7
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 6.2e-20 100.1 52 82.7
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 6.2e-20 100.1 52 80.8
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 8.0e-20 99.8 52 80.8
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 8.0e-20 99.8 51 86.3
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 8.0e-20 99.8 51 82.4
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 8.0e-20 99.8 51 82.4
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 1.0e-19 99.4 52 80.8
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 1.0e-19 99.4 52 78.8
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 1.0e-19 99.4 52 78.8
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 1.0e-19 99.4 52 78.8
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 1.0e-19 99.4 51 84.3
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.0e-19 99.4 51 86.3
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 1.4e-19 99.0 51 84.3
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 1.4e-19 99.0 52 78.8
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 1.4e-19 99.0 52 76.9
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 1.4e-19 99.0 52 80.8
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 1.8e-19 98.6 52 82.7
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 1.8e-19 98.6 51 82.4
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 2.3e-19 98.2 51 80.4
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.3e-19 98.2 52 76.9
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 3.1e-19 97.8 52 82.7
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 4.0e-19 97.4 52 80.8
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 4.0e-19 97.4 52 80.8
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 5.2e-19 97.1 52 80.8
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 6.8e-19 96.7 52 76.9
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 6.8e-19 96.7 52 76.9
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 6.8e-19 96.7 47 85.1
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 8.9e-19 96.3 54 79.6
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 8.9e-19 96.3 51 82.4
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 1.5e-18 95.5 47 83.0
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 2.6e-18 94.7 50 84.0
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 4.4e-18 94.0 52 76.9
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 5.8e-18 93.6 46 84.8
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 7.5e-18 93.2 49 77.6
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.7e-17 92.0 49 79.6
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 6.4e-17 90.1 49 77.6
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 1.4e-16 89.0 46 80.4
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 3.2e-16 87.8 50 74.0
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 7.0e-16 86.7 51 74.5
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 7.0e-16 86.7 47 76.6
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.2e-15 85.9 52 65.4
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 4.6e-15 84.0 50 66.0
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-14 81.6 50 64.0
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 1.9e-13 78.6 43 81.4
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 3.0e-06 54.7 33 63.6


User provided reference genes

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