Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 5.0e-139 497.7 234 100.0
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 9.8e-127 456.8 224 95.5
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 3.8e-123 444.9 237 89.5
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 5.6e-122 441.0 237 88.2
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 4.0e-120 434.9 237 86.9
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 1.2e-119 433.3 237 86.5
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 1.5e-119 433.0 240 84.2
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 1.4e-117 426.4 237 84.8
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 3.5e-116 421.8 237 84.0
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 4.6e-116 421.4 237 83.1
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 4.6e-116 421.4 237 83.1
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 3.3e-114 415.2 237 81.4
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 2.1e-113 412.5 237 80.6
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 4.7e-113 411.4 237 80.2
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 4.7e-113 411.4 237 81.4
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.0e-112 410.2 237 81.0
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 4.0e-112 408.3 237 78.9
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 5.2e-112 407.9 243 76.5
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 5.2e-112 407.9 237 80.2
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 1.2e-111 406.8 237 79.7
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 1.5e-111 406.4 237 80.2
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 2.0e-111 406.0 237 78.9
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 2.6e-111 405.6 237 78.5
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 4.4e-111 404.8 243 77.0
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 4.4e-111 404.8 243 77.0
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 4.4e-111 404.8 243 77.0
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 4.4e-111 404.8 237 78.1
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 5.8e-111 404.4 237 78.9
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 5.8e-111 404.4 237 78.9
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 9.8e-111 403.7 237 78.5
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 1.3e-110 403.3 237 77.6
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.2e-110 402.5 243 76.5
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 2.9e-110 402.1 237 78.9
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 3.7e-110 401.7 243 76.1
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 3.7e-110 401.7 237 79.7
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 8.3e-110 400.6 237 77.6
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 8.3e-110 400.6 237 77.6
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 8.3e-110 400.6 243 77.0
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.1e-109 400.2 243 76.5
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 1.4e-109 399.8 243 75.7
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.4e-109 399.8 237 76.8
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 1.4e-109 399.8 237 77.2
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 3.2e-109 398.7 232 79.3
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 5.4e-109 397.9 237 78.1
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 5.4e-109 397.9 237 78.5
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 5.4e-109 397.9 237 77.6
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 7.0e-109 397.5 237 77.6
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 7.0e-109 397.5 237 77.6
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 9.2e-109 397.1 237 77.6
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 1.2e-108 396.7 237 77.6
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 2.0e-108 396.0 244 77.0
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 2.0e-108 396.0 237 75.9
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 2.0e-108 396.0 236 77.1
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 3.5e-108 395.2 243 74.5
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 3.5e-108 395.2 237 77.2
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 3.5e-108 395.2 219 84.9
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 4.6e-108 394.8 237 75.9
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 6.0e-108 394.4 237 76.8
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 1.0e-107 393.7 237 76.4
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 1.0e-107 393.7 237 77.2
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 1.7e-107 392.9 237 76.8
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.3e-107 392.5 237 76.8
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 2.3e-107 392.5 237 75.5
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 3.0e-107 392.1 239 76.6
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 3.0e-107 392.1 237 75.5
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 3.9e-107 391.7 237 76.4
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 3.9e-107 391.7 237 76.8
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 5.0e-107 391.3 237 76.4
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 6.6e-107 391.0 237 75.9
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 6.6e-107 391.0 237 75.9
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 8.6e-107 390.6 243 73.7
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 1.1e-106 390.2 237 75.5
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 1.1e-106 390.2 243 73.7
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 2.5e-106 389.0 238 74.4
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 2.5e-106 389.0 240 76.7
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 3.3e-106 388.7 237 76.4
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 5.6e-106 387.9 237 76.4
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 9.5e-106 387.1 237 75.5
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 1.2e-105 386.7 237 75.5
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 4.7e-105 384.8 237 75.1
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 4.7e-105 384.8 237 75.1
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 4.7e-105 384.8 237 75.1
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 6.2e-105 384.4 237 74.3
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 6.2e-105 384.4 237 74.3
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 8.1e-105 384.0 237 75.5
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 1.1e-104 383.6 237 74.7
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 1.1e-104 383.6 237 74.7
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 1.4e-104 383.3 235 76.2
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 2.3e-104 382.5 236 73.7
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 2.3e-104 382.5 236 73.7
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 5.2e-104 381.3 239 73.2
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 6.8e-104 380.9 237 73.8
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 1.2e-103 380.2 271 67.2
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 2.0e-103 379.4 237 74.3
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 2.0e-103 379.4 264 68.2
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 2.0e-103 379.4 251 72.1
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 9.8e-103 377.1 271 66.8
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 1.3e-102 376.7 235 74.9
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 1.7e-102 376.3 230 76.1
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.1e-101 373.6 236 72.0
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.1e-101 373.6 236 72.0
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 1.1e-101 373.6 243 70.8
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 1.9e-101 372.9 237 72.6
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 9.2e-101 370.5 238 74.4
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 1.6e-100 369.8 238 73.5
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 1.6e-100 369.8 238 73.5
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 3.5e-100 368.6 240 72.5
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 3.5e-100 368.6 240 72.5
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 3.5e-100 368.6 240 72.5
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 4.6e-100 368.2 300 61.7
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 6.0e-100 367.9 238 72.7
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 4.4e-95 351.7 237 71.7
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 8.4e-94 347.4 241 64.3
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 4.1e-93 345.1 242 64.9
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 2.7e-92 342.4 242 64.0
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.3e-91 339.3 218 73.4
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 8.6e-91 337.4 233 70.8
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.1e-90 337.0 207 74.4
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 3.3e-90 335.5 237 63.7
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 4.3e-90 335.1 207 73.9
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 9.6e-90 334.0 232 65.5
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 4.0e-88 328.6 225 68.4
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 1.2e-87 327.0 229 63.3
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 5.4e-85 318.2 232 60.8
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 2.5e-82 309.3 241 59.8
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 2.4e-80 302.8 206 70.4
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 5.3e-80 301.6 238 58.4
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 1.9e-74 283.1 185 72.4
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 1.9e-69 266.5 150 79.3
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 3.5e-68 262.3 149 79.2
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 1.3e-67 260.4 224 60.7
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 1.1e-58 230.7 136 75.7
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 1.7e-54 216.9 177 59.9
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 9.3e-53 211.1 158 65.2
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 2.7e-52 209.5 119 81.5
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-47 191.4 154 55.2
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.2e-44 184.1 113 75.2
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 5.1e-43 178.7 198 49.0
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 1.5e-39 167.2 129 65.1
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 2.5e-37 159.8 210 45.2
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 2.9e-30 136.3 77 76.6
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 9.4e-29 131.3 81 71.6
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 2.1e-28 130.2 183 36.6
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 1.8e-27 127.1 73 76.7
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 6.7e-27 125.2 70 75.7
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 2.0e-26 123.6 70 75.7
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.6e-23 114.0 52 98.1
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 2.0e-18 97.1 64 65.6
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 9.8e-18 94.7 55 78.2
Zm00001eb414970 Zea mays HOM05D002775 ORTHO05D003262 1.7e-09 67.4 214 24.8
MCO02G163 Micromonas commoda HOM05D002775 ORTHO05D003262 2.8e-09 66.6 133 32.3
Sabra10G0066200 Salix brachista HOM05D002775 ORTHO05D003262 2.4e-08 63.5 205 24.4
Psat2g121200 Pisum sativum HOM05D002775 ORTHO05D003262 4.1e-08 62.8 206 24.3
Sc04g0008210 Simmondsia chinensis HOM05D002775 ORTHO05D003262 5.4e-08 62.4 203 25.6
Ciclev10032480m.g Citrus clementina HOM05D002775 ORTHO05D003262 9.2e-08 61.6 205 25.4
Potri.010G093900 Populus trichocarpa HOM05D002775 ORTHO05D003262 9.2e-08 61.6 205 24.4
arahy.Tifrunner.gnm1.ann1.7KL7FE Arachis hypogaea HOM05D002775 ORTHO05D003262 1.2e-07 61.2 205 24.4
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 1.2e-07 61.2 33 75.8
TWI12G0226 Tripterygium wilfordii HOM05D002775 ORTHO05D003262 2.0e-07 60.5 206 25.7
Medtr7g039510 Medicago truncatula HOM05D002775 ORTHO05D003262 2.7e-07 60.1 196 26.0
arahy.Tifrunner.gnm1.ann1.BG5WH1 Arachis hypogaea HOM05D002775 ORTHO05D003262 3.5e-07 59.7 205 23.9
VMungo1215G1815 Vigna mungo HOM05D002775 ORTHO05D003262 3.5e-07 59.7 205 24.9
CDE05G2768 Ceratophyllum demersum HOM05D002775 ORTHO05D003262 5.9e-07 58.9 122 27.9
CSS0003680 Camellia sinensis var. sinensis HOM05D002775 ORTHO05D003262 1.0e-06 58.2 131 30.5
Ca_04781_v3 Cicer arietinum L. HOM05D002775 ORTHO05D003262 1.0e-06 58.2 205 24.4
Lsat_1_v5_gn_8_52761 Lactuca sativa HOM05D002775 ORTHO05D003262 1.0e-06 58.2 205 25.4
Nn3g17211 Nelumbo nucifera HOM05D002775 ORTHO05D003262 1.0e-06 58.2 151 28.5
Phvul.002G086200 Phaseolus vulgaris HOM05D002775 ORTHO05D003262 1.0e-06 58.2 205 24.4
Hma1.2p1_0598F.1_g186650 Hydrangea macrophylla HOM05D002775 ORTHO05D003262 1.3e-06 57.8 205 22.9
Rhsim12G0062200 Rhododendron simsii HOM05D002775 ORTHO05D003262 1.3e-06 57.8 199 23.1
Hund05890 Selenicereus undatus HOM05D002775 ORTHO05D003262 1.3e-06 57.8 207 22.7
Glyma.01G046200 Glycine max HOM05D002775 ORTHO05D003262 2.3e-06 57.0 151 26.5
ECA233G2285 Erigeron canadensis HOM05D002775 ORTHO05D003262 3.8e-06 56.2 208 24.0
TPR.G37102 Trifolium pratense HOM05D002775 ORTHO05D003262 3.8e-06 56.2 216 23.6
Lalb_Chr10g0098201 Lupinus albus HOM05D002775 ORTHO05D003262 5.0e-06 55.8 205 23.9


User provided reference genes

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