Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 0.0e+00 1339.7 686 100.0
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 2.5e-303 1045.0 692 81.5
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 6.5e-280 967.2 689 75.6
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 6.5e-280 967.2 623 82.2
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 1.2e-278 963.0 758 71.1
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 5.0e-256 887.9 689 70.8
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 1.2e-254 883.2 690 70.4
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 2.6e-252 875.5 694 71.9
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 1.2e-249 866.7 694 71.6
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 3.5e-249 865.1 709 69.7
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 5.2e-245 851.3 694 70.2
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 4.7e-238 828.2 725 65.0
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 3.4e-228 795.4 688 67.4
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 1.4e-202 710.3 695 60.3
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 7.1e-202 708.0 688 59.2
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 1.0e-200 704.1 698 58.7
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 1.5e-196 690.3 710 56.1
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 2.3e-192 676.4 697 57.1
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 3.0e-192 676.0 706 58.4
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.3e-191 672.2 700 57.1
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 3.8e-187 659.1 700 56.6
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.4e-186 657.1 690 56.7
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 9.4e-186 654.4 697 55.1
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.7e-185 652.9 700 56.0
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 7.9e-185 651.4 694 56.1
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 1.4e-184 650.6 679 56.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 8.8e-184 647.9 699 56.1
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.5e-183 647.1 706 55.8
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 2.6e-183 646.4 687 57.2
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.7e-182 643.7 692 56.1
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 8.2e-182 641.3 700 55.3
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 9.1e-181 637.9 692 55.3
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 7.7e-180 634.8 688 56.1
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 2.2e-179 633.3 683 55.3
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.8e-179 632.5 702 55.4
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.9e-178 630.2 859 46.9
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.6e-177 627.1 689 55.4
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 2.1e-177 626.7 689 54.6
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 2.0e-175 620.2 687 54.1
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.7e-174 617.1 697 54.4
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.8e-174 616.3 685 53.4
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 2.4e-173 613.2 694 52.3
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 1.2e-172 610.9 686 53.2
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 7.7e-172 608.2 685 53.1
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 4.0e-168 595.9 689 52.5
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.7e-166 590.5 656 54.7
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 7.0e-165 585.1 700 51.4
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 3.5e-164 582.8 713 50.9
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.3e-163 580.9 694 53.3
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 3.6e-161 572.8 704 50.4
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.0e-160 571.2 693 50.8
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 1.4e-160 570.9 684 51.0
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 6.8e-160 568.5 694 52.2
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 4.8e-158 562.4 688 51.2
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 1.1e-157 561.2 694 48.4
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 1.2e-156 557.8 694 48.7
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 1.6e-156 557.4 704 50.1
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 3.5e-156 556.2 736 48.4
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 5.9e-156 555.4 755 48.3
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 2.9e-155 553.1 711 50.1
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 9.5e-154 548.1 732 47.4
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.4e-152 544.3 682 51.5
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.8e-152 543.9 701 48.4
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 4.0e-152 542.7 752 47.9
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 2.6e-151 540.0 680 49.9
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 3.4e-151 539.7 692 49.0
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 4.4e-151 539.3 649 52.2
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 5.7e-151 538.9 689 51.1
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.3e-150 537.7 686 50.3
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 1.7e-150 537.3 627 51.8
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 3.7e-150 536.2 686 49.4
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 4.9e-150 535.8 689 47.8
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.1e-149 534.6 650 52.3
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.1e-149 534.6 605 52.9
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 2.4e-149 533.5 678 50.4
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 4.1e-149 532.7 693 48.2
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.2e-148 531.2 650 52.0
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.6e-148 530.8 707 47.4
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 1.7e-147 527.3 687 50.5
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 2.3e-147 526.9 687 50.5
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 3.8e-147 526.2 703 47.5
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 8.6e-147 525.0 714 45.9
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 1.5e-146 524.2 697 48.9
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 3.3e-146 523.1 694 49.0
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 5.6e-146 522.3 629 53.1
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 2.1e-145 520.4 629 53.1
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 2.8e-145 520.0 698 47.7
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 3.6e-145 519.6 680 49.0
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.0e-144 518.1 650 49.4
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 2.3e-144 516.9 631 52.8
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 2.3e-144 516.9 709 47.8
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 1.2e-143 514.6 694 49.0
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 6.4e-142 508.8 634 51.3
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 6.4e-142 508.8 635 51.3
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.8e-141 507.3 704 47.2
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 5.4e-141 505.8 659 48.6
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 4.6e-140 502.7 599 53.8
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.3e-139 501.1 659 48.1
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 5.0e-139 499.2 714 45.4
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 2.5e-138 496.9 706 46.9
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 9.5e-138 495.0 620 51.9
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 1.2e-137 494.6 701 46.2
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 8.0e-137 491.9 688 46.9
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.4e-136 491.1 691 47.3
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 2.4e-133 480.3 742 45.0
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.0e-131 474.9 631 47.1
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.3e-131 473.8 684 44.6
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 2.4e-125 453.8 700 45.6
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 1.2e-124 451.4 688 45.2
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 3.5e-124 449.9 653 44.0
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 4.0e-120 436.4 770 41.2
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 2.3e-115 420.6 700 42.1
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 5.3e-104 382.9 424 55.0
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 9.0e-104 382.1 653 41.2
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 4.9e-102 376.3 675 39.7
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 2.3e-99 367.5 691 39.1
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.4e-96 357.5 615 40.3
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.3e-89 335.1 509 45.4
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.9e-86 323.9 728 35.3
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.7e-73 281.6 614 37.1
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 5.0e-70 270.0 673 32.1
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 2.1e-68 264.6 718 33.7
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 2.8e-57 227.6 683 31.2
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 6.5e-54 216.5 664 28.9
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 2.1e-52 211.5 163 68.1
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.4e-50 203.8 315 43.2
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 3.6e-44 184.1 233 49.4
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.8e-43 181.8 171 59.1
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 3.7e-41 174.1 470 31.9
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 7.0e-40 169.9 224 47.8
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 6.8e-35 153.3 745 26.0
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 1.2e-34 152.5 124 64.5
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.9e-30 137.9 85 78.8
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 8.9e-27 126.3 146 54.8
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 6.2e-20 103.6 107 48.6
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 2.3e-19 101.7 623 23.8
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 2.5e-13 81.6 182 35.7
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.4e-08 65.1 88 47.7
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 3.5e-07 61.2 61 50.8
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.7e-06 58.9 111 42.3
Atru.chr3.336 Acer truncatum HOM05D004186 ORTHO05D006037 6.6e-06 57.0 63 44.4


User provided reference genes

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