Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 2.0e-138 495.7 242 100.0
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 1.8e-131 472.6 241 94.6
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 9.1e-128 460.3 242 91.7
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 1.6e-127 459.5 242 92.6
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 1.0e-123 446.8 240 89.6
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.2e-121 439.1 241 89.2
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 3.7e-121 438.3 240 88.8
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 2.4e-120 435.6 234 89.3
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 3.9e-118 428.3 234 89.3
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 5.6e-117 424.5 268 80.2
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 5.4e-112 407.9 236 83.9
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 3.5e-111 405.2 236 83.9
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 7.8e-111 404.1 232 83.2
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 1.9e-109 399.4 232 83.6
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 1.2e-108 396.7 235 82.6
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 4.7e-108 394.8 233 81.5
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 4.7e-108 394.8 233 81.5
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.7e-108 394.8 233 79.8
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 4.7e-108 394.8 233 81.1
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 6.2e-108 394.4 233 81.1
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 6.2e-108 394.4 244 78.7
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 1.1e-107 393.7 234 81.2
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 2.3e-107 392.5 233 80.7
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 3.1e-107 392.1 233 81.1
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 3.1e-107 392.1 233 80.7
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 5.2e-107 391.3 244 78.3
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 5.2e-107 391.3 233 80.3
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 2.0e-106 389.4 233 79.8
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 2.6e-106 389.0 241 78.0
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 3.4e-106 388.7 235 80.0
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 4.4e-106 388.3 239 79.1
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 4.4e-106 388.3 234 79.1
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 4.4e-106 388.3 233 80.7
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 7.5e-106 387.5 244 77.5
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 9.8e-106 387.1 233 78.5
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 9.8e-106 387.1 240 78.3
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 1.7e-105 386.3 232 80.6
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 2.9e-105 385.6 234 80.3
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 3.7e-105 385.2 244 76.2
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 4.9e-105 384.8 234 81.2
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 2.4e-104 382.5 233 79.4
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 3.2e-104 382.1 238 76.5
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 4.1e-104 381.7 241 76.3
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 4.1e-104 381.7 233 76.8
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 4.1e-104 381.7 233 78.5
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 7.1e-104 380.9 241 76.8
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 7.1e-104 380.9 233 78.5
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 7.1e-104 380.9 233 78.1
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 1.2e-103 380.2 233 76.4
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 1.6e-103 379.8 233 77.3
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.6e-103 379.8 228 78.9
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 1.6e-103 379.8 242 75.2
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 1.6e-103 379.8 244 74.6
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 2.1e-103 379.4 233 79.0
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 2.1e-103 379.4 238 75.6
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 2.7e-103 379.0 233 75.5
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 3.5e-103 378.6 228 79.4
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 3.5e-103 378.6 233 77.7
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 6.0e-103 377.9 230 81.7
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.0e-102 377.1 230 78.7
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 1.0e-102 377.1 232 77.6
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 1.3e-102 376.7 233 77.7
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 1.3e-102 376.7 233 78.1
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 1.7e-102 376.3 233 76.8
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 1.7e-102 376.3 233 77.7
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 2.3e-102 375.9 233 76.8
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 3.0e-102 375.6 238 75.6
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 5.1e-102 374.8 233 76.0
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 5.1e-102 374.8 233 76.8
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 6.6e-102 374.4 233 75.1
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 5.6e-101 371.3 233 75.1
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 3.6e-100 368.6 233 73.8
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 1.8e-99 366.3 236 74.2
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 4.0e-99 365.2 243 73.7
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 5.2e-99 364.8 251 72.1
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 6.8e-99 364.4 254 70.9
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 6.8e-99 364.4 257 69.3
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 8.9e-99 364.0 251 72.1
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 1.2e-98 363.6 243 73.3
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.4e-98 362.1 233 73.4
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 3.7e-97 358.6 233 74.7
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 1.4e-96 356.7 233 75.5
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 1.9e-96 356.3 234 75.2
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 2.4e-96 355.9 233 74.2
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 5.4e-96 354.8 233 70.8
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 1.7e-94 349.7 235 73.2
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 1.5e-93 346.7 238 70.6
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 4.3e-93 345.1 255 69.0
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 5.6e-93 344.7 233 69.1
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 2.1e-92 342.8 233 68.7
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 3.1e-91 339.0 248 67.7
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 6.8e-91 337.8 236 69.5
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.6e-90 335.9 235 66.8
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 1.7e-89 333.2 257 66.1
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.4e-89 331.3 236 66.1
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 1.0e-86 323.9 236 66.9
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 1.3e-86 323.6 228 66.7
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 1.7e-86 323.2 238 64.3
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 3.0e-86 322.4 219 70.3
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 5.1e-86 321.6 219 69.4
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 1.3e-84 317.0 219 67.1
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 3.6e-84 315.5 234 67.9
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.4e-83 312.8 249 67.9
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 2.4e-83 312.8 230 64.8
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 5.3e-83 311.6 243 60.5
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 7.6e-82 307.8 228 64.0
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 9.9e-82 307.4 234 65.0
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 2.2e-81 306.2 236 68.6
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 3.8e-81 305.4 243 60.5
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 1.2e-79 300.4 233 64.4
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 7.3e-77 291.2 244 58.2
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 1.3e-76 290.4 233 64.8
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 5.8e-74 281.6 233 60.5
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 1.1e-72 277.3 161 80.1
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 2.3e-70 269.6 245 60.8
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 8.7e-70 267.7 184 67.4
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 1.9e-69 266.5 233 57.9
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 1.5e-66 256.9 183 68.9
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 2.0e-66 256.5 231 59.7
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 1.2e-63 247.3 224 55.8
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 3.5e-63 245.7 291 46.7
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 6.0e-63 245.0 243 58.0
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 6.2e-60 235.0 163 73.0
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 1.5e-58 230.3 196 61.2
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.5e-58 230.3 182 65.4
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 8.4e-57 224.6 237 54.4
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 3.3e-53 212.6 150 69.3
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 5.3e-51 205.3 164 61.6
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 1.1e-48 197.6 120 72.5
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 7.9e-47 191.4 295 40.0
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 8.5e-41 171.4 240 44.6
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 1.6e-34 150.6 115 65.2
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 1.5e-32 144.1 135 56.3
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 3.2e-32 142.9 99 69.7
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.2e-31 141.0 277 39.4
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 1.8e-27 127.1 101 62.4
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 7.0e-27 125.2 128 55.5
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 9.1e-27 124.8 126 51.6
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 3.6e-23 112.8 71 73.2
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 2.0e-21 107.1 58 87.9
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 3.0e-14 83.2 74 55.4
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 8.8e-14 81.6 94 46.8
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.7e-12 77.4 72 58.3
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 9.2e-11 71.6 57 59.6
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 9.2e-11 71.6 54 64.8


User provided reference genes

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