Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.0e-144 515.8 269 100.0
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 2.0e-144 515.8 269 100.0
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 2.0e-128 462.6 269 88.1
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 1.5e-126 456.4 269 86.6
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.9e-126 456.1 269 87.4
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 2.8e-117 425.6 270 80.4
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.5e-115 419.9 269 80.7
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.1e-113 411.8 269 78.1
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 1.2e-112 410.2 269 78.4
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 4.6e-112 408.3 264 78.8
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 7.3e-110 401.0 273 73.3
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 1.2e-109 400.2 269 77.0
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 7.1e-105 384.4 269 75.1
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.3e-98 363.6 269 69.5
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 2.2e-98 362.8 269 74.0
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 4.2e-97 358.6 269 68.4
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.8e-95 353.2 248 77.0
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.6e-93 346.7 264 67.8
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 3.6e-93 345.5 269 66.2
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 9.0e-92 340.9 270 67.0
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 5.5e-89 331.6 270 68.1
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.7e-88 329.3 270 64.4
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 5.6e-86 321.6 264 62.5
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 1.3e-85 320.5 267 62.5
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.6e-85 320.1 268 60.8
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 2.4e-84 316.2 263 62.4
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 4.0e-84 315.5 261 64.0
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 9.0e-84 314.3 247 66.0
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 9.0e-84 314.3 269 59.9
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 3.4e-83 312.4 270 58.1
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 5.8e-83 311.6 269 61.0
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 5.8e-83 311.6 266 61.7
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 7.6e-83 311.2 254 64.6
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 2.9e-82 309.3 268 61.6
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.1e-81 307.4 268 61.2
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.4e-81 307.0 270 61.5
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 2.5e-81 306.2 247 64.4
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 3.2e-81 305.8 251 62.2
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 4.2e-81 305.4 247 63.6
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 4.2e-81 305.4 269 59.1
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 4.2e-81 305.4 242 64.5
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 4.2e-81 305.4 242 64.5
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 9.3e-81 304.3 270 60.4
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.2e-80 303.9 270 55.9
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.1e-80 303.1 214 70.6
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 2.7e-80 302.8 250 62.8
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 3.5e-80 302.4 262 61.8
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 1.3e-79 300.4 265 60.8
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.8e-79 300.1 267 59.2
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 3.9e-79 298.9 273 59.3
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.3e-77 293.9 256 59.4
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 2.1e-77 293.1 248 61.3
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.8e-77 292.7 226 64.2
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 3.7e-77 292.4 263 57.0
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 4.8e-77 292.0 244 61.9
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 1.8e-76 290.0 258 59.3
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.4e-76 289.7 247 59.5
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.4e-76 289.7 247 59.5
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 3.1e-76 289.3 252 59.9
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 4.1e-76 288.9 242 62.0
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 4.1e-76 288.9 268 57.5
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 9.0e-76 287.7 263 58.2
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 9.0e-76 287.7 263 58.2
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 9.0e-76 287.7 247 59.1
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.5e-75 287.0 263 58.2
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 2.0e-75 286.6 252 59.1
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.0e-75 286.6 252 59.9
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 2.0e-75 286.6 252 59.9
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 7.6e-75 284.6 252 59.1
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.0e-74 284.3 274 57.3
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 3.8e-74 282.3 274 57.3
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.1e-73 280.8 252 57.5
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 1.4e-73 280.4 257 57.6
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.9e-73 280.0 242 60.7
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 2.5e-73 279.6 275 56.0
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 3.2e-73 279.3 253 58.5
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 4.2e-73 278.9 251 57.4
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.2e-73 278.9 272 56.6
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 9.3e-73 277.7 253 58.1
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.6e-72 276.9 272 56.2
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.6e-72 276.9 267 54.7
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.6e-72 276.9 245 55.9
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 2.1e-72 276.6 247 57.5
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 2.7e-72 276.2 274 56.2
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 3.6e-72 275.8 261 56.7
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 6.1e-72 275.0 247 57.5
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.3e-71 273.1 264 57.2
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 3.9e-71 272.3 270 54.8
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 6.7e-71 271.6 227 60.8
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 6.7e-71 271.6 244 59.0
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 8.7e-71 271.2 207 67.6
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.1e-70 270.8 216 67.6
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 2.5e-70 269.6 247 57.1
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 2.5e-70 269.6 251 56.6
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 5.7e-70 268.5 229 61.1
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 5.7e-70 268.5 260 54.6
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 7.4e-70 268.1 250 55.6
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 9.7e-70 267.7 216 67.1
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 2.8e-69 266.2 224 58.9
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 2.8e-69 266.2 225 59.1
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 3.7e-69 265.8 246 60.2
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 4.8e-69 265.4 274 54.7
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 1.4e-68 263.8 270 52.6
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.8e-68 263.5 227 60.8
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.8e-68 263.5 263 53.6
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 1.8e-68 263.5 232 59.5
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 9.1e-68 261.2 245 58.8
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 5.9e-67 258.5 229 59.4
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.6e-64 250.4 250 52.4
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 6.1e-64 248.4 227 57.7
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.7e-61 240.4 250 54.0
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 1.4e-60 237.3 275 50.2
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 5.3e-60 235.3 259 50.2
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 4.5e-59 232.3 200 61.0
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.7e-54 215.3 220 55.0
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.4e-52 210.7 232 47.0
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.4e-52 210.7 266 46.2
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.7e-50 203.8 225 51.6
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 4.0e-47 192.6 135 70.4
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.5e-46 190.7 252 46.4
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 1.0e-42 177.9 219 45.2
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 3.6e-40 169.5 134 61.9
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 2.2e-37 160.2 209 42.1
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 9.1e-36 154.8 177 45.8
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 9.1e-36 154.8 266 41.7
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.0e-35 153.7 266 42.5
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.5e-35 152.5 230 38.7
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.7e-34 150.6 229 37.6
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 5.0e-34 149.1 263 36.1
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.6e-32 144.1 140 54.3
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.8e-32 143.3 115 57.4
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 6.1e-32 142.1 216 38.4
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 8.0e-32 141.7 230 36.1
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 3.4e-30 136.3 150 47.3
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 9.8e-30 134.8 232 35.8
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.7e-24 115.9 157 47.8
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 5.6e-17 92.4 77 64.9
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.6e-16 90.9 186 31.7
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 2.6e-14 83.6 95 49.5
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 7.5e-14 82.0 83 51.8
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 1.7e-13 80.9 87 51.7
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 1.5e-09 67.8 50 72.0
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 9.5e-09 65.1 50 72.0
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 2.8e-08 63.5 146 32.2
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 6.8e-07 58.9 74 44.6
Carub.0002s0414 Capsella rubella HOM05D001019 ORTHO05D000859 4.4e-06 56.2 176 31.2


User provided reference genes

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