Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01851_v3 Cicer arietinum L. HOM05D005742 ORTHO05D001888 8.7e-82 307.0 162 100.0
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 6.5e-61 237.7 162 77.8
Psat1g160600 Pisum sativum HOM05D005742 ORTHO05D001888 1.1e-60 236.9 155 78.1
Glyma.15G141100 Glycine max HOM05D005742 ORTHO05D001888 1.5e-41 173.3 147 61.2
LjContig00081g0023529 Lotus japonicus HOM05D005742 ORTHO05D001888 3.7e-40 168.7 164 56.1
Glyma.09G036200 Glycine max HOM05D005742 ORTHO05D001888 2.4e-39 166.0 156 55.8
VMungo0540G2083 Vigna mungo HOM05D005742 ORTHO05D001888 3.4e-38 162.2 145 55.9
Lj6g0008349 Lotus japonicus HOM05D005742 ORTHO05D001888 6.5e-37 157.9 149 54.4
Phvul.006G117500 Phaseolus vulgaris HOM05D005742 ORTHO05D001888 1.9e-36 156.4 150 52.0
VMungo0540G0961 Vigna mungo HOM05D005742 ORTHO05D001888 3.3e-33 145.6 144 51.4
arahy.Tifrunner.gnm1.ann1.X5UH65 Arachis hypogaea HOM05D005742 ORTHO05D001888 2.2e-32 142.9 165 51.5
TPR.G27258 Trifolium pratense HOM05D005742 ORTHO05D001888 3.7e-32 142.1 107 60.7
Lalb_Chr20g0120901 Lupinus albus HOM05D005742 ORTHO05D001888 6.1e-27 124.8 143 48.3
Lalb_Chr15g0089211 Lupinus albus HOM05D005742 ORTHO05D001888 2.6e-25 119.4 145 42.1
Lalb_Chr15g0089221 Lupinus albus HOM05D005742 ORTHO05D001888 2.6e-25 119.4 145 42.1
Lalb_Chr15g0089231 Lupinus albus HOM05D005742 ORTHO05D001888 2.2e-24 116.3 145 41.4
Lalb_Chr18g0058731 Lupinus albus HOM05D005742 ORTHO05D001888 8.2e-24 114.4 144 42.4
Lalb_Chr18g0058721 Lupinus albus HOM05D005742 ORTHO05D001888 5.3e-23 111.7 146 43.2
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 1.1e-20 104.0 145 41.4
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 1.5e-20 103.6 161 39.8
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 1.5e-20 103.6 164 39.0
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 3.6e-19 99.0 164 40.2
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.0e-18 97.4 147 40.8
Dinv15186 Davidia involucrata HOM05D001340 ORTHO05D002318 1.8e-18 96.7 127 39.4
Oeu003757.1 Olea europaea HOM05D005742 ORTHO05D001888 1.8e-18 96.7 171 34.5
Actinidia15607 Actinidia chinensis HOM05D005742 ORTHO05D001888 2.3e-18 96.3 147 38.8
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 4.0e-18 95.5 162 37.0
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 5.2e-18 95.1 145 35.2
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 6.8e-18 94.7 160 35.0
Prupe.1G118800 Prunus persica HOM05D005742 ORTHO05D001888 8.8e-18 94.4 161 37.9
Actinidia18454 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.2e-17 94.0 147 37.4
Actinidia40376 Actinidia chinensis HOM05D005742 ORTHO05D001888 1.2e-17 94.0 147 37.4
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 1.5e-17 93.6 154 37.0
MSTRG.24819 Avicennia marina HOM05D005742 ORTHO05D001888 2.0e-17 93.2 147 39.5
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 2.6e-17 92.8 152 36.2
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 5.7e-17 91.7 148 35.1
TWI53G1179 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 2.2e-16 89.7 150 39.3
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 4.8e-16 88.6 152 36.2
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 4.8e-16 88.6 152 36.2
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 8.3e-16 87.8 151 35.1
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 8.3e-16 87.8 142 35.9
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 1.1e-15 87.4 157 37.6
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.1e-15 87.4 133 39.1
ATR0796G165 Amborella trichopoda HOM05D005742 ORTHO05D001888 1.4e-15 87.0 147 36.7
TWI09G1381 Tripterygium wilfordii HOM05D005742 ORTHO05D001888 1.8e-15 86.7 150 36.7
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.4e-15 86.3 158 33.5
Cc03_g00920 Coffea canephora HOM05D005742 ORTHO05D001888 3.1e-15 85.9 146 38.4
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 3.1e-15 85.9 133 38.3
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 5.4e-15 85.1 154 33.8
Lj6P690T34 Lonicera japonica HOM05D005742 ORTHO05D001888 7.0e-15 84.7 158 32.9
MBI18_g17308_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 7.0e-15 84.7 158 34.2
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 9.1e-15 84.3 147 32.0
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 1.6e-14 83.6 144 34.7
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 1.6e-14 83.6 145 35.2
Gohir.A02G054001 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.6e-14 83.6 133 38.3
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 1.6e-14 83.6 160 32.5
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 1.0e-13 80.9 119 37.0
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.3e-13 80.5 148 35.8
FAN12G0951 Fragaria x ananassa HOM05D001258 ORTHO05D000158 3.8e-13 79.0 153 30.1
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 6.5e-13 78.2 148 35.1
SalBow8G0437 Salvia bowleyana HOM05D005742 ORTHO05D001888 6.5e-13 78.2 147 34.0
SalBow8G4915 Salvia bowleyana HOM05D005742 ORTHO05D001888 6.5e-13 78.2 147 34.0
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 6.5e-13 78.2 161 35.4
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 8.5e-13 77.8 147 34.7
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 1.1e-12 77.4 148 33.8
FvH4_4g19570 Fragaria vesca HOM05D005742 ORTHO05D001888 1.1e-12 77.4 147 30.6
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.5e-12 77.0 148 36.5
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.9e-12 76.6 149 30.9
CAN.G244.7 Capsicum annuum HOM05D005742 ORTHO05D001888 3.2e-12 75.9 145 35.2
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 5.5e-12 75.1 143 31.5
Migut.G00051 Erythranthe guttata HOM05D005742 ORTHO05D001888 7.2e-12 74.7 148 33.8
Peaxi162Scf00228g00024 Petunia axillaris HOM05D005742 ORTHO05D001888 7.2e-12 74.7 117 35.0
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 1.2e-11 73.9 116 34.5
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.6e-11 73.6 147 32.0
COL.COLO4_34630 Corchorus olitorius HOM05D005742 ORTHO05D001888 2.7e-11 72.8 152 32.9
unitig_749.g13364 Utricularia gibba HOM05D005742 ORTHO05D001888 2.7e-11 72.8 149 30.9
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 3.6e-11 72.4 148 34.5
MSTRG.21772 Avicennia marina HOM05D005742 ORTHO05D001888 3.6e-11 72.4 146 29.5
Duzib138G0624 Durio zibethinus HOM05D008182 ORTHO05D001888 3.6e-11 72.4 145 33.8
Nitab4.5_0000169g0180 Nicotiana tabacum HOM05D005742 ORTHO05D001888 4.7e-11 72.0 118 37.3
Thecc.04G299300 Theobroma cacao HOM05D005742 ORTHO05D001888 4.7e-11 72.0 150 32.0
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 6.1e-11 71.6 162 32.1
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 8.0e-11 71.2 149 28.9
Nitab4.5_0002218g0040 Nicotiana tabacum HOM05D005742 ORTHO05D001888 8.0e-11 71.2 117 35.0
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.4e-10 70.5 153 35.9
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.4e-10 70.5 153 35.9
Potri.014G119200 Populus trichocarpa HOM05D008182 ORTHO05D001888 2.3e-10 69.7 147 29.9
SGA_v2.0_scaffold473G52104 Striga asiatica HOM05D005742 ORTHO05D001888 2.3e-10 69.7 150 30.0
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.3e-10 69.7 142 33.8
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 3.0e-10 69.3 145 35.2
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 3.0e-10 69.3 145 35.2
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 4.0e-10 68.9 149 34.2
Gohir.D11G113300 Gossypium hirsutum HOM05D008182 ORTHO05D001888 4.0e-10 68.9 145 31.0
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 5.2e-10 68.6 143 33.6
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 5.2e-10 68.6 144 29.2
PGSC0003DMG400021845 Solanum tuberosum HOM05D005742 ORTHO05D001888 6.8e-10 68.2 145 33.8
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 8.8e-10 67.8 148 33.8
Gohir.A08G040400 Gossypium hirsutum HOM05D008182 ORTHO05D001888 8.8e-10 67.8 145 32.4
Solyc01g059940.2 Solanum lycopersicum HOM05D005742 ORTHO05D001888 8.8e-10 67.8 145 32.4
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 8.8e-10 67.8 142 34.5
Gohir.D08G050500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.2e-09 67.4 145 31.7
Sabra14G0088400 Salix brachista HOM05D008182 ORTHO05D001888 1.2e-09 67.4 149 28.9
Sopen01g026080 Solanum pennellii HOM05D005742 ORTHO05D001888 1.2e-09 67.4 145 32.4
Duzib211G0330 Durio zibethinus HOM05D008182 ORTHO05D001888 2.0e-09 66.6 145 31.7
Gohir.A11G108700 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.0e-09 66.6 145 30.3
Gohir.A11G109000 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.0e-09 66.6 145 31.0
Gorai.006G248200 Gossypium raimondii HOM05D008182 ORTHO05D001888 3.4e-09 65.9 144 33.3
Gorai.007G122100 Gossypium raimondii HOM05D008182 ORTHO05D001888 3.4e-09 65.9 145 30.3
QL12p019526 Quercus lobata HOM05D005742 ORTHO05D001888 3.4e-09 65.9 148 28.4
unitig_22.g6961 Utricularia gibba HOM05D005742 ORTHO05D001888 3.4e-09 65.9 157 31.8
Gohir.D11G113400 Gossypium hirsutum HOM05D008182 ORTHO05D001888 4.4e-09 65.5 145 29.7
Ca_00798_v3 Cicer arietinum L. HOM05D008489 ORTHO05D010677 5.7e-09 65.1 125 31.2
Gohir.D11G113500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 5.7e-09 65.1 145 29.7
Gorai.004G050100 Gossypium raimondii HOM05D008182 ORTHO05D001888 5.7e-09 65.1 145 31.0
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 5.7e-09 65.1 157 29.9
Lalb_Chr15g0088681 Lupinus albus HOM05D008489 ORTHO05D010677 1.3e-08 63.9 116 34.5
Manes.05G004700 Manihot esculenta HOM05D008182 ORTHO05D001888 1.7e-08 63.5 144 29.9
HPP92_027565 Vanilla planifolia HOM05D005742 ORTHO05D001888 1.7e-08 63.5 150 28.0
Gohir.A11G308750 Gossypium hirsutum HOM05D008182 ORTHO05D001888 2.2e-08 63.2 144 33.3
Sabra02G0161800 Salix brachista HOM05D008182 ORTHO05D001888 2.2e-08 63.2 161 31.1
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.8e-08 62.8 155 25.8
Gorai.007G121900 Gossypium raimondii HOM05D008182 ORTHO05D001888 3.7e-08 62.4 145 29.0
Thecc.01G314800 Theobroma cacao HOM05D008182 ORTHO05D001888 3.7e-08 62.4 145 29.0
HPP92_017245 Vanilla planifolia HOM05D005742 ORTHO05D001888 3.7e-08 62.4 150 28.0
COL.COLO4_23220 Corchorus olitorius HOM05D008182 ORTHO05D001888 4.9e-08 62.0 144 29.9
Gohir.A11G108900 Gossypium hirsutum HOM05D008182 ORTHO05D001888 4.9e-08 62.0 145 29.0
PSO357G0458 Papaver somniferum HOM05D005742 ORTHO05D001888 6.3e-08 61.6 171 22.2
TWI75G0476 Tripterygium wilfordii HOM05D008182 ORTHO05D001888 6.3e-08 61.6 151 27.2
DCAR_023352 Daucus carota HOM05D005742 ORTHO05D001888 8.3e-08 61.2 118 32.2
Gohir.D09G226550 Gossypium hirsutum HOM05D008182 ORTHO05D001888 8.3e-08 61.2 144 31.9
Potri.002G194900 Populus trichocarpa HOM05D008182 ORTHO05D001888 1.1e-07 60.8 161 30.4
PSO170G5750 Papaver somniferum HOM05D005742 ORTHO05D001888 1.4e-07 60.5 171 22.8
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.8e-07 60.1 151 25.8
Gohir.A09G224750 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.8e-07 60.1 145 28.3
MSTRG.3861 Avicennia marina HOM05D005742 ORTHO05D001888 4.1e-07 58.9 144 33.3
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 4.1e-07 58.9 158 27.8
PGR031G3690 Punica granatum HOM05D005742 ORTHO05D001888 4.1e-07 58.9 143 29.4
Gohir.D09G226500 Gossypium hirsutum HOM05D008182 ORTHO05D001888 5.4e-07 58.5 144 33.3
Potri.002G194800 Populus trichocarpa HOM05D008182 ORTHO05D001888 5.4e-07 58.5 161 29.2
Potri.002G195000 Populus trichocarpa HOM05D008182 ORTHO05D001888 5.4e-07 58.5 163 27.6
Glyma.02G011500 Glycine max HOM05D008489 ORTHO05D010677 7.0e-07 58.2 123 27.6
Gorai.006G248100 Gossypium raimondii HOM05D008182 ORTHO05D001888 7.0e-07 58.2 144 31.2
VMungo1383G1128 Vigna mungo HOM05D008489 ORTHO05D010677 7.0e-07 58.2 143 28.0
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 9.2e-07 57.8 161 28.0
Gohir.A09G224700 Gossypium hirsutum HOM05D008182 ORTHO05D001888 1.6e-06 57.0 144 30.6
QL03p019019 Quercus lobata HOM05D003556 ORTHO05D003404 2.0e-06 56.6 145 26.2
Manes.03G045700 Manihot esculenta HOM05D004113 ORTHO05D005233 2.7e-06 56.2 123 27.6
QL03p019662 Quercus lobata HOM05D003556 ORTHO05D003404 2.7e-06 56.2 145 26.2
QL03p019667 Quercus lobata HOM05D003556 ORTHO05D003404 2.7e-06 56.2 145 26.2
QL08p042930 Quercus lobata HOM05D003556 ORTHO05D003404 2.7e-06 56.2 145 26.2
FAN07G2165 Fragaria x ananassa HOM05D005742 ORTHO05D001888 3.5e-06 55.8 84 38.1
Actinidia06790 Actinidia chinensis HOM05D005742 ORTHO05D001888 5.9e-06 55.1 77 39.0
Gohir.A11G108866 Gossypium hirsutum HOM05D008182 ORTHO05D001888 5.9e-06 55.1 142 27.5
Lalb_Chr20g0119961 Lupinus albus HOM05D008489 ORTHO05D010677 5.9e-06 55.1 116 27.6
Zm00001eb040760 Zea mays HOM05D000036 ORTHO05D001888 5.9e-06 55.1 171 26.9
VMungo1215G2168 Vigna mungo HOM05D001445 ORTHO05D003404 7.7e-06 54.7 150 25.3


User provided reference genes

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