Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.5e-36 155.6 76 100.0
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.2e-22 109.4 90 67.8
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.2e-22 109.4 90 67.8
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.4e-21 105.9 62 83.9
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.4e-21 105.9 62 83.9
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.4e-21 105.9 62 83.9
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 1.4e-21 105.9 110 54.5
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 1.8e-21 105.5 111 54.1
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 4.0e-21 104.4 61 80.3
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 6.8e-21 103.6 61 80.3
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 2.0e-20 102.1 80 66.2
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 2.6e-20 101.7 99 59.6
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 5.8e-20 100.5 56 80.4
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 5.8e-20 100.5 76 65.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 7.5e-20 100.1 61 78.7
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 7.5e-20 100.1 61 77.0
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 9.9e-20 99.8 53 84.9
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 9.9e-20 99.8 61 77.0
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 9.9e-20 99.8 61 75.4
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.3e-19 99.4 49 91.8
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 1.3e-19 99.4 57 80.7
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 1.7e-19 99.0 61 77.0
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 1.7e-19 99.0 80 63.8
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.7e-19 99.0 68 72.1
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.7e-19 99.0 49 91.8
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.2e-19 98.6 71 70.4
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.2e-19 98.6 76 65.8
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.2e-19 98.6 80 65.0
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.2e-19 98.6 80 65.0
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.2e-19 98.6 66 74.2
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.2e-19 98.6 48 91.7
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 2.2e-19 98.6 70 67.1
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 2.2e-19 98.6 61 77.0
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 2.2e-19 98.6 76 64.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 2.2e-19 98.6 60 81.7
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 2.2e-19 98.6 61 75.4
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 2.2e-19 98.6 59 78.0
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.7e-19 97.8 70 70.0
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 3.7e-19 97.8 61 75.4
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 3.7e-19 97.8 74 67.6
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.7e-19 97.8 66 74.2
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 3.7e-19 97.8 66 72.7
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 3.7e-19 97.8 56 73.2
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.7e-19 97.8 61 75.4
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 3.7e-19 97.8 61 75.4
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 3.7e-19 97.8 61 75.4
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 4.9e-19 97.4 66 72.7
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 4.9e-19 97.4 76 63.2
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.9e-19 97.4 61 75.4
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 4.9e-19 97.4 65 72.3
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 4.9e-19 97.4 49 83.7
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.9e-19 97.4 49 89.8
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 4.9e-19 97.4 59 76.3
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 4.9e-19 97.4 69 63.8
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 6.4e-19 97.1 49 85.7
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 6.4e-19 97.1 49 85.7
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 6.4e-19 97.1 49 85.7
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 6.4e-19 97.1 81 63.0
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 6.4e-19 97.1 66 72.7
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 6.4e-19 97.1 49 87.8
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 6.4e-19 97.1 49 87.8
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 8.3e-19 96.7 59 74.6
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 8.3e-19 96.7 49 83.7
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 8.3e-19 96.7 66 69.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 8.3e-19 96.7 67 71.6
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 8.3e-19 96.7 62 74.2
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.1e-18 96.3 74 66.2
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.1e-18 96.3 74 66.2
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-18 96.3 49 87.8
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-18 96.3 58 77.6
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.1e-18 96.3 58 77.6
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.4e-18 95.9 83 65.1
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 1.4e-18 95.9 76 61.8
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.4e-18 95.9 53 77.4
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.4e-18 95.9 64 73.4
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.4e-18 95.9 49 89.8
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.4e-18 95.9 74 62.2
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 1.4e-18 95.9 49 83.7
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 1.4e-18 95.9 49 85.7
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.9e-18 95.5 59 72.9
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 1.9e-18 95.5 65 69.2
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 1.9e-18 95.5 82 62.2
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 2.4e-18 95.1 49 85.7
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.4e-18 95.1 48 87.5
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.4e-18 95.1 80 62.5
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 2.4e-18 95.1 49 87.8
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 2.4e-18 95.1 66 69.7
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 3.2e-18 94.7 49 87.8
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 3.2e-18 94.7 75 66.7
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 3.2e-18 94.7 76 67.1
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 3.2e-18 94.7 49 87.8
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 3.2e-18 94.7 76 60.5
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 3.2e-18 94.7 62 69.4
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 4.1e-18 94.4 76 67.1
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 4.1e-18 94.4 68 69.1
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 4.1e-18 94.4 58 75.9
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 4.1e-18 94.4 89 60.7
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 4.1e-18 94.4 58 75.9
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 5.4e-18 94.0 75 57.3
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 5.4e-18 94.0 64 62.5
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 5.4e-18 94.0 63 69.8
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 5.4e-18 94.0 49 83.7
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 5.4e-18 94.0 79 63.3
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 7.1e-18 93.6 73 63.0
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 7.1e-18 93.6 76 60.5
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 7.1e-18 93.6 79 63.3
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 7.1e-18 93.6 58 74.1
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 9.2e-18 93.2 77 63.6
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 9.2e-18 93.2 80 62.5
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 9.2e-18 93.2 61 73.8
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 1.2e-17 92.8 85 57.6
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 1.2e-17 92.8 85 57.6
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 1.2e-17 92.8 83 62.7
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.6e-17 92.4 74 66.2
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.6e-17 92.4 49 87.8
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 1.6e-17 92.4 49 83.7
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.6e-17 92.4 68 67.6
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.6e-17 92.4 56 75.0
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 1.6e-17 92.4 48 83.3
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.1e-17 92.0 74 66.2
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.7e-17 91.7 67 67.2
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.7e-17 91.7 65 69.2
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 3.5e-17 91.3 49 79.6
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 3.5e-17 91.3 49 81.6
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 4.6e-17 90.9 45 84.4
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 4.6e-17 90.9 67 65.7
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 4.6e-17 90.9 83 61.4
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 6.0e-17 90.5 83 62.7
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 7.8e-17 90.1 76 59.2
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 7.8e-17 90.1 49 81.6
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 7.8e-17 90.1 77 62.3
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 1.0e-16 89.7 53 73.6
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 1.0e-16 89.7 53 73.6
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 1.0e-16 89.7 53 73.6
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.0e-16 89.7 75 60.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 1.3e-16 89.4 43 88.4
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.0e-16 88.2 76 59.2
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.9e-16 87.8 76 59.2
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 8.6e-16 86.7 76 59.2
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 8.6e-16 86.7 76 59.2
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.5e-15 85.9 44 79.5
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.9e-15 85.5 71 54.9
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.2e-14 82.8 75 54.7
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 2.1e-14 82.0 49 79.6
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 4.7e-14 80.9 60 61.7
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 8.1e-14 80.1 42 78.6
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.2e-13 77.4 40 80.0
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 5.2e-13 77.4 40 80.0
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 6.8e-13 77.0 66 59.1
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 3.4e-12 74.7 76 53.9
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 8.4e-11 70.1 56 66.1
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 4.1e-10 67.8 47 68.1
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.6e-06 55.8 30 76.7


User provided reference genes

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