Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2508.8 1258 100.0
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 2437.9 1258 97.9
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 2384.4 1258 94.9
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 2364.7 1274 93.3
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 2270.7 1259 89.6
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 2267.7 1259 89.5
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2240.3 1258 88.1
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2202.6 1258 86.9
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2192.2 1259 85.9
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 2183.3 1285 84.4
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 2119.4 1257 84.1
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 2069.3 1161 87.9
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2006.9 1261 79.3
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1998.0 1258 79.7
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1991.9 1258 78.8
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1983.8 1256 78.3
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1980.7 1258 78.1
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1980.3 1259 77.8
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1978.4 1259 77.8
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1977.6 1258 78.5
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1976.1 1259 78.2
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1971.8 1257 78.1
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1970.7 1258 78.2
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1968.4 1258 78.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1967.6 1257 77.6
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1963.3 1264 77.2
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1959.9 1257 77.0
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1957.6 1257 77.7
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1956.4 1257 77.1
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1956.4 1273 76.6
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1953.3 1300 75.6
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1952.9 1257 76.6
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1949.5 1256 76.8
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1948.3 1257 76.5
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1948.3 1256 76.4
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1947.9 1257 76.6
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1946.8 1258 76.5
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1946.0 1257 76.5
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1944.9 1256 76.3
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1940.2 1264 76.7
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1929.1 1257 76.7
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1924.1 1258 76.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1916.7 1240 77.8
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1910.2 1259 74.7
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1909.4 1256 76.2
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1897.1 1259 74.5
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1897.1 1263 74.8
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1894.0 1325 72.5
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1892.5 1517 66.1
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1889.8 1261 74.6
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1884.8 1262 74.0
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1879.8 1280 73.6
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1876.3 1259 73.7
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1875.1 1262 74.2
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1872.8 1260 73.3
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1872.1 1260 73.3
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1870.5 1260 73.3
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1867.8 1261 73.1
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1866.7 1263 73.1
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1865.9 1261 73.0
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1865.9 1261 73.0
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1863.6 1262 73.1
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1859.3 1261 73.8
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1859.0 1267 72.6
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1857.8 1290 71.9
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1851.6 1260 72.5
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1848.6 1260 72.5
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1848.2 1257 74.1
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1847.0 1263 72.7
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1847.0 1261 72.5
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1845.5 1257 73.0
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1841.2 1259 72.4
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1840.9 1259 72.1
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1837.8 1257 72.9
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1835.5 1263 72.1
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1830.8 1271 71.6
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1828.5 1262 72.1
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1827.0 1266 71.8
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1825.4 1258 72.7
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1825.1 1260 72.6
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1825.1 1258 72.6
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1823.5 1242 73.2
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1822.8 1259 72.0
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1820.1 1260 72.9
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1819.3 1006 90.4
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1818.5 1260 72.4
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1806.2 1169 76.6
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1777.3 1243 71.3
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1757.3 1270 70.7
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1737.2 1240 70.3
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1734.5 1256 68.2
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1731.1 1322 66.8
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1680.2 1254 67.0
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1597.4 1034 77.4
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1580.5 1231 64.7
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1578.5 1095 71.7
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1569.7 1078 72.4
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1553.9 1264 62.7
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1537.7 1051 73.9
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1510.4 1033 72.9
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1488.0 1059 70.8
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1428.7 1097 67.7
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1390.2 1013 69.3
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1375.1 923 75.0
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1355.5 856 78.2
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1297.3 1392 50.7
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1188.7 1357 47.6
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1163.3 1260 52.5
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1143.3 774 72.7
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1117.1 746 73.3
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 6.3e-305 1051.2 868 62.6
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 1.0e-294 1017.3 871 64.5
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.8e-288 996.5 1155 47.1
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 1.2e-287 993.8 1012 54.2
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.3e-262 910.6 592 77.9
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 9.6e-245 851.3 538 77.7
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.0e-238 831.2 446 93.0
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.5e-202 711.1 1436 33.8
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 1.1e-179 635.2 450 69.1
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.3e-156 558.5 490 59.4
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 3.9e-153 547.0 306 86.6
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.2e-117 429.1 316 66.8
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.5e-100 370.2 220 85.5
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 3.2e-99 367.9 205 87.3
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 2.3e-97 361.7 207 88.4
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 6.7e-97 360.1 320 62.8
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 7.7e-93 346.7 372 49.2
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.2e-85 322.8 194 78.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 1.9e-83 315.5 255 61.2
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 5.3e-78 297.4 179 81.0
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 4.7e-74 284.3 159 89.3
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 2.6e-72 278.5 262 53.1
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-69 269.2 257 54.1
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-69 269.2 257 54.1
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.6e-69 269.2 257 54.1
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 3.8e-68 264.6 152 82.2
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.9e-67 262.3 181 68.5
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.8e-63 248.4 449 35.0
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 9.1e-62 243.4 197 62.4
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.5e-56 226.1 149 70.5
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.5e-56 226.1 164 68.9
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 4.7e-50 204.5 138 70.3
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 6.4e-47 194.1 136 65.4
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.5e-45 188.3 147 63.9
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.0e-44 184.5 121 75.2
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 6.6e-44 184.1 102 90.2
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 5.6e-43 181.0 107 76.6
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.4e-41 176.4 107 74.8
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.2e-40 173.3 168 53.0
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.4e-40 171.8 107 72.9
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.4e-40 171.8 107 72.9
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.9e-39 168.7 98 86.7
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.9e-39 168.7 106 72.6
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 3.2e-38 165.2 127 65.4
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.5e-35 156.4 98 76.5
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 4.3e-35 154.8 111 70.3
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.2e-31 142.5 81 76.5
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 1.6e-29 136.3 65 92.3
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 7.8e-29 134.0 78 79.5
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 1.5e-27 129.8 123 58.5
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 4.3e-27 128.3 87 69.0
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 4.3e-27 128.3 79 79.7
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 2.3e-20 105.9 109 54.1
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 8.6e-20 104.0 62 77.4
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 2.5e-19 102.4 107 43.9
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 9.0e-17 94.0 568 24.1
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 9.0e-17 94.0 57 75.4
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 2.0e-16 92.8 81 59.3
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-15 90.1 52 75.0
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 4.6e-13 81.6 99 46.5
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 1.7e-12 79.7 388 21.9
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 3.3e-11 75.5 69 50.7
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.4e-09 69.3 44 77.3
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 9.0e-09 67.4 52 65.4


User provided reference genes

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