Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 9.0e-204 713.4 363 100.0
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 9.0e-204 713.4 363 100.0
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.3e-186 656.4 363 91.5
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.9e-182 642.5 347 91.6
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 4.3e-182 641.3 364 90.4
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 7.2e-177 624.0 369 84.3
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.2e-168 596.7 369 81.6
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.1e-166 590.1 368 81.5
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.0e-166 589.3 366 81.1
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 9.1e-156 553.9 362 76.8
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 6.5e-154 547.7 353 76.5
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.1e-152 542.7 364 72.8
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.7e-152 541.6 365 73.7
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 1.4e-151 540.0 353 75.9
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.8e-151 537.7 352 75.0
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 2.2e-149 532.7 354 77.7
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 2.2e-149 532.7 354 77.7
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.8e-149 532.3 360 71.9
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 6.3e-149 531.2 353 74.2
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.4e-148 530.0 355 73.8
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 3.1e-148 528.9 354 73.2
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 7.0e-148 527.7 353 73.9
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.6e-147 526.6 352 74.4
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-147 526.6 354 72.9
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-147 526.6 354 73.2
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-147 526.6 354 73.2
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 2.0e-147 526.2 422 65.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 2.9e-146 522.3 364 70.1
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 3.8e-146 521.9 352 71.6
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 3.8e-146 521.9 352 71.9
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.5e-145 520.0 354 73.2
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 3.3e-145 518.8 360 69.7
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 7.2e-145 517.7 352 74.1
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 9.5e-145 517.3 360 70.0
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 8.0e-144 514.2 349 70.5
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 8.0e-144 514.2 353 72.5
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.4e-143 513.5 350 72.6
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.3e-143 512.7 349 71.9
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.3e-143 512.7 353 72.0
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 4.0e-143 511.9 353 72.0
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 6.8e-143 511.1 360 70.6
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 6.8e-143 511.1 349 69.9
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.7e-141 506.5 353 70.3
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 2.2e-141 506.1 365 67.9
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 2.2e-141 506.1 355 71.0
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 3.7e-141 505.4 364 70.6
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 4.9e-141 505.0 366 68.9
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 6.3e-141 504.6 353 70.0
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.1e-140 503.8 353 69.7
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.4e-140 502.7 367 67.3
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 4.1e-140 501.9 353 69.4
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 5.4e-140 501.5 354 69.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 7.0e-140 501.1 367 67.3
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.0e-139 499.6 353 69.1
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 2.7e-139 499.2 349 67.6
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 3.5e-139 498.8 367 67.0
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 3.5e-139 498.8 320 75.3
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 4.5e-139 498.4 366 67.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 4.5e-139 498.4 353 69.4
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 5.9e-139 498.0 349 68.8
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 5.9e-139 498.0 347 71.5
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 7.8e-139 497.7 367 66.8
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 7.8e-139 497.7 355 70.1
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.7e-138 496.5 367 66.5
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.7e-138 496.5 361 67.6
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 2.3e-138 496.1 367 66.2
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.3e-138 496.1 367 66.8
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 3.8e-138 495.4 355 69.6
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 3.8e-138 495.4 349 70.8
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 5.0e-138 495.0 367 67.3
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.1e-137 493.8 382 65.2
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.1e-137 493.8 354 67.8
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 1.1e-137 493.8 355 68.5
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.3e-137 491.9 387 64.6
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 5.6e-137 491.5 370 67.0
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 1.2e-136 490.3 358 67.3
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.6e-136 490.0 372 66.7
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.8e-135 486.5 367 65.9
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 2.3e-135 486.1 291 82.8
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.0e-135 485.7 354 68.1
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 4.1e-132 475.3 354 65.8
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 9.2e-132 474.2 376 62.0
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 3.5e-131 472.2 354 66.4
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 4.6e-131 471.9 396 62.4
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.6e-131 471.9 376 61.7
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.0e-131 471.5 376 61.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 3.0e-130 469.2 363 63.9
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 8.6e-130 467.6 351 65.5
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.2e-127 458.4 352 66.2
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.2e-126 457.2 353 64.9
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 9.8e-126 454.1 343 64.7
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.3e-125 453.8 352 64.8
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 3.7e-125 452.2 307 70.4
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.4e-124 449.5 323 67.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.2e-123 447.2 369 65.3
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-123 446.8 360 61.4
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.5e-123 445.7 350 65.1
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 7.8e-123 444.5 354 61.3
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.5e-121 440.3 354 63.0
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 1.5e-121 440.3 359 62.7
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.3e-119 433.0 352 62.8
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.3e-117 427.2 300 70.7
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.2e-117 426.4 350 60.3
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.9e-117 425.2 332 65.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.9e-116 423.3 293 72.4
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 6.0e-115 418.3 297 70.0
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 9.9e-110 401.0 286 71.0
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.6e-107 393.7 376 55.6
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.5e-105 386.3 286 65.0
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 3.4e-102 375.9 284 64.1
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 4.6e-99 365.5 229 75.5
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 7.8e-99 364.8 352 56.0
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.0e-98 364.4 276 64.5
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.5e-97 360.5 352 56.2
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.6e-96 357.1 345 52.2
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.6e-94 349.7 348 50.3
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 3.8e-93 345.9 316 54.7
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.4e-92 344.0 362 53.0
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 6.0e-91 338.6 334 51.8
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 2.1e-88 330.1 335 48.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.4e-87 327.4 349 51.9
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 9.0e-87 324.7 369 50.4
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.0e-86 323.6 260 63.1
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.5e-60 236.9 154 70.8
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 4.4e-57 226.1 335 38.8
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.8e-50 204.1 137 69.3
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 4.7e-43 179.5 361 31.9
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 3.8e-37 159.8 340 35.0
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-35 154.8 136 58.1
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 8.8e-34 148.7 139 59.7
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.1e-31 140.2 198 41.4
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.7e-30 137.1 135 51.9
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-27 128.3 94 64.9
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-26 125.2 94 62.8
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-25 121.7 115 59.1
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.5e-25 121.3 110 60.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.2e-23 112.1 80 67.5
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.7e-22 110.5 78 67.9
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 2.9e-21 107.1 110 50.9
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.1e-20 105.1 336 25.0
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.5e-20 104.8 110 50.0
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 7.3e-20 102.4 90 62.2
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 8.9e-18 95.5 104 56.7
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.9e-18 95.5 70 65.7
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-17 93.6 69 65.2
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.5e-17 92.4 67 64.2
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.5e-17 92.4 70 64.3
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.8e-17 92.0 69 63.8
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.8e-17 92.0 69 63.8
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-16 91.7 69 63.8
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.9e-16 89.7 69 62.3
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.4e-15 87.4 85 56.5
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.4e-15 87.4 70 58.6
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.2e-15 87.0 70 60.0
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.1e-12 78.6 45 80.0
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-12 78.2 92 48.9
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.5e-12 77.4 70 54.3
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 9.5e-12 75.5 59 66.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.0e-11 72.4 86 48.8
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-10 70.1 47 72.3
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 6.8e-10 69.3 60 65.0
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.6e-06 58.2 46 63.0


User provided reference genes

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