Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01715_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 3.2e-50 201.4 101 100.0
Ca_30684_v3 Cicer arietinum L. HOM05D003074 ORTHO05D002434 3.2e-50 201.4 101 100.0
TPR.G16595 Trifolium pratense HOM05D003074 ORTHO05D002434 7.2e-34 147.1 101 73.3
Medtr3g051530 Medicago truncatula HOM05D003074 ORTHO05D002434 1.0e-32 143.3 101 74.3
Medtr3g051570 Medicago truncatula HOM05D003074 ORTHO05D002434 3.0e-32 141.7 102 73.5
Medtr3g051610 Medicago truncatula HOM05D003074 ORTHO05D002434 1.1e-31 139.8 101 72.3
Medtr3g051510 Medicago truncatula HOM05D003074 ORTHO05D002434 3.3e-31 138.3 101 73.3
Glyma.08G316000 Glycine max HOM05D003074 ORTHO05D002434 1.9e-26 122.5 106 64.2
Lj6g0015217 Lotus japonicus HOM05D003074 ORTHO05D002434 5.5e-26 120.9 105 64.8
Glyma.18G096700 Glycine max HOM05D003074 ORTHO05D002434 4.6e-25 117.9 106 65.1
Phvul.006G043100 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 6.1e-25 117.5 100 62.0
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 1.3e-19 99.8 128 49.2
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 5.0e-19 97.8 123 48.8
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 6.5e-19 97.4 121 54.5
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 6.5e-19 97.4 121 54.5
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 8.5e-19 97.1 120 53.3
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 1.1e-18 96.7 131 47.3
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 9.4e-18 93.6 120 50.0
Glyma.02G290900 Glycine max HOM05D003074 ORTHO05D002434 9.4e-18 93.6 99 55.6
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.2e-17 93.2 116 50.9
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 4.7e-17 91.3 111 49.5
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.0e-16 90.1 60 76.7
LjContig00272g0022666 Lotus japonicus HOM05D003074 ORTHO05D002434 1.8e-16 89.4 102 51.0
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 2.3e-16 89.0 124 46.0
TPR.G36054 Trifolium pratense HOM05D003074 ORTHO05D002434 2.3e-16 89.0 69 72.5
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 2.3e-16 89.0 117 49.6
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 3.0e-16 88.6 113 48.7
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 3.9e-16 88.2 118 47.5
TPR.G34803 Trifolium pratense HOM05D003074 ORTHO05D002434 3.9e-16 88.2 53 81.1
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.1e-15 86.7 121 44.6
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 1.5e-15 86.3 138 42.0
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 2.0e-15 85.9 123 44.7
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 2.6e-15 85.5 122 45.9
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.4e-15 84.7 61 70.5
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 4.4e-15 84.7 100 47.0
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 5.7e-15 84.3 118 45.8
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.3e-14 83.2 61 68.9
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.3e-14 83.2 108 46.3
Lalb_Chr04g0248431 Lupinus albus HOM05D003074 ORTHO05D002434 2.2e-14 82.4 103 49.5
Medtr5g092710 Medicago truncatula HOM05D003074 ORTHO05D002434 2.2e-14 82.4 96 47.9
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.8e-14 82.0 112 48.2
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 2.8e-14 82.0 75 61.3
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 2.8e-14 82.0 121 44.6
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.8e-14 82.0 120 45.8
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 3.7e-14 81.6 139 44.6
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 3.7e-14 81.6 84 56.0
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 4.8e-14 81.3 124 44.4
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 6.3e-14 80.9 112 44.6
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 8.2e-14 80.5 64 67.2
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 1.1e-13 80.1 103 44.7
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.4e-13 79.7 84 54.8
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 1.8e-13 79.3 56 71.4
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.8e-13 79.3 110 46.4
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 2.4e-13 79.0 127 42.5
ECA240G4169 Erigeron canadensis HOM05D003074 ORTHO05D002434 3.1e-13 78.6 89 50.6
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 5.3e-13 77.8 123 42.3
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 7.0e-13 77.4 115 41.7
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 9.1e-13 77.0 64 60.9
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 9.1e-13 77.0 124 40.3
Sabra16G0289700 Salix brachista HOM05D003074 ORTHO05D002434 9.1e-13 77.0 112 44.6
MBI02_g40709_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 1.2e-12 76.6 122 41.0
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 1.2e-12 76.6 112 45.5
PGSC0003DMG400032292 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.2e-12 76.6 103 46.6
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 1.6e-12 76.3 126 42.9
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.6e-12 76.3 109 45.9
PGSC0003DMG400031876 Solanum tuberosum HOM05D003074 ORTHO05D002434 1.6e-12 76.3 103 46.6
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.0e-12 75.9 118 38.1
Dinv13888 Davidia involucrata HOM05D003074 ORTHO05D002434 2.6e-12 75.5 75 56.0
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.5e-12 75.1 55 67.3
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.5e-12 74.7 97 46.4
PGSC0003DMG400029820 Solanum tuberosum HOM05D003074 ORTHO05D002434 4.5e-12 74.7 103 46.6
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.9e-12 74.3 114 43.9
Phvul.008G267000 Phaseolus vulgaris HOM05D003074 ORTHO05D002434 5.9e-12 74.3 100 48.0
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 7.7e-12 73.9 62 62.9
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 1.0e-11 73.6 106 46.2
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 1.3e-11 73.2 110 40.9
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.3e-11 73.2 97 45.4
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 1.7e-11 72.8 115 40.0
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 2.2e-11 72.4 123 41.5
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 2.2e-11 72.4 118 38.1
MELO3C025367.2 Cucumis melo HOM05D003074 ORTHO05D002434 2.2e-11 72.4 106 43.4
Lsat_1_v5_gn_5_6000 Lactuca sativa HOM05D003074 ORTHO05D002434 2.2e-11 72.4 61 63.9
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 5.0e-11 71.2 109 42.2
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 5.0e-11 71.2 90 48.9
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 6.5e-11 70.9 75 52.0
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 8.5e-11 70.5 124 37.9
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 8.5e-11 70.5 124 37.9
Sabra11G0125400 Salix brachista HOM05D003074 ORTHO05D002434 8.5e-11 70.5 59 64.4
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 1.1e-10 70.1 109 42.2
Thhalv10021814m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 1.1e-10 70.1 110 40.9
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 1.5e-10 69.7 114 40.4
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 1.5e-10 69.7 140 36.4
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 1.5e-10 69.7 140 36.4
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.5e-10 69.7 62 59.7
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 1.9e-10 69.3 56 60.7
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.9e-10 69.3 128 41.4
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 1.9e-10 69.3 109 45.0
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 2.5e-10 68.9 133 38.3
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.5e-10 68.9 140 36.4
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.5e-10 68.9 140 36.4
Aqoxy1G02176 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.2e-10 68.6 120 40.0
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.2e-10 68.6 141 36.2
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.2e-10 68.2 64 57.8
Sed0005061 Sechium edule HOM05D003074 ORTHO05D002434 4.2e-10 68.2 105 40.0
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 5.5e-10 67.8 107 39.3
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 5.5e-10 67.8 77 51.9
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 9.4e-10 67.0 124 39.5
Aa31LG8G7150 Aethionema arabicum HOM05D010457 ORTHO05D002434 1.2e-09 66.6 109 38.5
arahy.Tifrunner.gnm1.ann1.B0CFPV Arachis hypogaea HOM05D003074 ORTHO05D002434 1.6e-09 66.2 105 43.8
arahy.Tifrunner.gnm1.ann1.22WBGR Arachis hypogaea HOM05D003074 ORTHO05D002434 2.1e-09 65.9 57 61.4
Carub.0003s2029 Capsella rubella HOM05D010457 ORTHO05D002434 2.7e-09 65.5 111 40.5
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 2.7e-09 65.5 126 37.3
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.7e-09 65.5 121 39.7
DCAR_022560 Daucus carota HOM05D003074 ORTHO05D002434 3.6e-09 65.1 124 38.7
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.6e-09 65.1 119 40.3
ClCG10G005340 Citrullus lanatus HOM05D003074 ORTHO05D002434 4.7e-09 64.7 102 38.2
Nitab4.5_0009995g0010 Nicotiana tabacum HOM05D003074 ORTHO05D002434 4.7e-09 64.7 93 43.0
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 6.1e-09 64.3 68 51.5
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 6.1e-09 64.3 134 37.3
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 6.1e-09 64.3 115 39.1
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 6.1e-09 64.3 59 59.3
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 6.1e-09 64.3 59 59.3
Aqoxy1G02175 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 8.0e-09 63.9 113 37.2
Sabra11G0125300 Salix brachista HOM05D003074 ORTHO05D002434 8.0e-09 63.9 95 42.1
ECA246G0494 Erigeron canadensis HOM05D003074 ORTHO05D002434 1.4e-08 63.2 109 39.4
Potri.001G435400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.4e-08 63.2 111 38.7
Potri.011G139400 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.4e-08 63.2 108 40.7
BcaC05g28318 Brassica carinata HOM05D010457 ORTHO05D002434 1.8e-08 62.8 118 36.4
C05p44000 Brassica napus HOM05D010457 ORTHO05D002434 1.8e-08 62.8 118 36.4
BolC5t33118H Brassica oleracea HOM05D010457 ORTHO05D002434 1.8e-08 62.8 118 36.4
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 1.8e-08 62.8 126 35.7
ATR0752G060 Amborella trichopoda HOM05D003074 ORTHO05D002434 2.3e-08 62.4 108 39.8
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 3.0e-08 62.0 109 40.4
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 3.0e-08 62.0 121 35.5
EL10Ac4g07811 Beta vulgaris HOM05D003074 ORTHO05D002434 4.0e-08 61.6 109 38.5
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 4.0e-08 61.6 114 36.0
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 5.2e-08 61.2 104 40.4
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 5.2e-08 61.2 60 61.7
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 5.2e-08 61.2 118 35.6
CDE02G3016 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 6.7e-08 60.8 86 43.0
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 6.7e-08 60.8 74 47.3
Gorai.009G178200 Gossypium raimondii HOM05D003074 ORTHO05D002434 6.7e-08 60.8 121 38.0
Sc03g0008600 Simmondsia chinensis HOM05D003074 ORTHO05D002434 6.7e-08 60.8 113 38.9
BraA05t21736Z Brassica rapa HOM05D010457 ORTHO05D002434 8.8e-08 60.5 116 36.2
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 8.8e-08 60.5 112 38.4
Zm00001eb151010 Zea mays HOM05D016178 ORTHO05D020926 1.1e-07 60.1 104 39.4
AUR62015772 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.5e-07 59.7 112 39.3
CsaV3_3G005050 Cucumis sativus L. HOM05D003074 ORTHO05D002434 1.5e-07 59.7 58 51.7
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 1.5e-07 59.7 59 57.6
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 1.5e-07 59.7 129 34.9
BcaB06g26099 Brassica carinata HOM05D010457 ORTHO05D002434 2.0e-07 59.3 123 37.4
A05p28590 Brassica napus HOM05D010457 ORTHO05D002434 2.0e-07 59.3 117 36.8
AUR62012700 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.0e-07 59.3 118 41.5
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 2.0e-07 59.3 121 34.7
Nitab4.5_0009398g0020 Nicotiana tabacum HOM05D003074 ORTHO05D002434 2.0e-07 59.3 108 39.8
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.0e-07 59.3 64 46.9
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 2.0e-07 59.3 57 49.1
Lsat_1_v5_gn_4_60581 Lactuca sativa HOM05D003074 ORTHO05D002434 2.6e-07 58.9 93 44.1
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 2.6e-07 58.9 64 43.8
Sopen03g005540 Solanum pennellii HOM05D037882 ORTHO05D002434 2.6e-07 58.9 125 36.0
unitig_85.g27325 Utricularia gibba HOM05D003074 ORTHO05D002434 2.6e-07 58.9 98 35.7
MSTRG.12971 Avicennia marina HOM05D003074 ORTHO05D002434 3.3e-07 58.5 113 38.1
CDE05G0485 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 3.3e-07 58.5 125 32.0
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.3e-07 58.5 116 35.3
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 3.3e-07 58.5 116 35.3
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 5.7e-07 57.8 82 41.5
Gohir.A05G169900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 5.7e-07 57.8 122 38.5
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 1.3e-06 56.6 73 46.6
Sed0016637 Sechium edule HOM05D003074 ORTHO05D002434 1.3e-06 56.6 129 33.3
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 2.2e-06 55.8 145 34.5
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 2.2e-06 55.8 116 34.5
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 2.2e-06 55.8 116 34.5
AUR62021958 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.8e-06 55.5 117 40.2
PGSC0003DMG400019879 Solanum tuberosum HOM05D003074 ORTHO05D002434 2.8e-06 55.5 102 36.3
Aqoxy1G02177 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 3.7e-06 55.1 115 31.3
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.8e-06 54.7 114 36.0
Gohir.D05G173050 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.8e-06 54.7 121 37.2
CsaV3_3G005060 Cucumis sativus L. HOM05D003074 ORTHO05D002434 6.3e-06 54.3 115 33.9
Duzib160G0150 Durio zibethinus HOM05D003074 ORTHO05D002434 6.3e-06 54.3 107 35.5
Sc16g0006080 Simmondsia chinensis HOM05D003074 ORTHO05D002434 6.3e-06 54.3 110 34.5
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 8.2e-06 53.9 63 39.7
Sopen02g011120 Solanum pennellii HOM05D003074 ORTHO05D002434 8.2e-06 53.9 102 36.3
PGSC0003DMG400005078 Solanum tuberosum HOM05D003074 ORTHO05D002434 8.2e-06 53.9 65 47.7


User provided reference genes

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