Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 2321.6 1230 100.0
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1908.6 1204 86.0
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 0.0e+00 1872.4 1205 84.8
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 0.0e+00 1833.9 1225 82.3
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1785.4 1206 80.3
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1755.0 1158 79.8
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1718.7 1156 77.9
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1681.0 1205 75.5
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1677.1 1206 76.1
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1675.6 1205 75.3
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1654.4 1158 75.4
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1337.0 1176 61.7
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1328.5 1167 62.2
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1323.9 1168 62.1
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1323.5 1170 62.3
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1318.9 1168 62.0
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1309.7 1165 61.7
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1306.2 1165 61.5
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1302.0 1167 60.2
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1295.4 1164 61.8
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1284.2 1161 60.9
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1280.0 1166 61.0
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1271.1 1168 60.4
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1269.6 1214 60.6
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1265.4 1165 60.6
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1261.5 1172 59.3
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1261.5 1172 59.9
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1257.3 1172 59.1
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1252.3 1163 61.0
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1249.6 1279 57.5
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1248.8 1268 57.9
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1238.4 1172 58.5
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1229.5 1167 58.4
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1221.1 1231 57.0
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1197.6 1164 58.2
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1187.9 1172 56.2
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1186.4 1169 56.5
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1181.8 1174 56.1
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1181.0 1175 57.4
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1173.3 1172 56.3
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1156.4 1218 57.6
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1155.2 1099 57.7
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 0.0e+00 1145.2 1165 55.8
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1139.4 1228 53.5
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 0.0e+00 1131.7 1173 55.3
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1130.2 1080 59.4
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1127.9 1183 54.3
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1121.3 1181 53.8
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 1115.9 1189 53.3
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 0.0e+00 1108.6 1167 53.8
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 1107.8 1249 51.4
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1104.4 742 79.8
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1102.4 1243 52.9
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1101.7 1186 54.2
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 0.0e+00 1100.9 1165 54.0
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 0.0e+00 1088.9 1237 51.7
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1079.3 1181 52.4
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 2.9e-310 1068.9 1173 52.9
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 3.2e-309 1065.4 1160 53.4
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 7.8e-308 1060.8 1185 52.7
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 2.5e-306 1055.8 1173 53.0
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 5.4e-301 1038.1 1023 57.8
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 4.3e-298 1028.5 1179 51.3
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 1.8e-296 1023.1 1190 51.1
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 3.3e-290 1002.3 1165 50.6
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 7.3e-290 1001.1 1168 51.1
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 1.3e-286 990.3 1231 47.1
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 1.3e-283 980.3 1171 49.1
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 5.1e-283 978.4 1185 49.2
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 1.6e-281 973.4 1161 48.6
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 9.0e-280 967.6 1176 48.5
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 2.6e-279 966.1 1172 49.9
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 9.3e-277 957.6 1178 48.9
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 6.6e-275 951.4 1172 51.2
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 3.2e-269 932.6 1185 47.6
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 1.6e-268 930.2 1065 53.0
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 4.6e-268 928.7 1119 48.3
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 5.3e-264 915.2 1099 50.5
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 1.1e-261 907.5 1169 46.0
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 5.5e-261 905.2 1032 52.4
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 4.5e-255 885.6 762 65.0
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 1.4e-253 880.6 1279 44.7
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 5.1e-235 818.9 1172 43.9
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 7.0e-224 781.9 1166 42.5
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 9.1e-216 755.0 725 58.8
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 4.5e-215 752.7 1054 43.7
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.6e-204 717.6 1170 40.9
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 7.8e-199 698.7 972 44.7
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 2.7e-167 594.0 383 78.9
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 4.0e-163 580.1 1203 35.0
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 2.1e-156 557.8 1245 34.6
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 6.4e-153 546.2 606 49.2
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.5e-138 498.4 1241 33.0
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 5.0e-137 493.4 1129 35.3
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.4e-120 438.7 622 46.6
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 2.0e-106 391.7 383 53.5
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 2.0e-90 338.6 447 49.4
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.5e-82 311.2 515 38.6
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 4.6e-74 284.3 267 59.6
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 2.7e-66 258.5 1282 26.8
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 1.8e-62 245.7 261 55.2
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 3.5e-58 231.5 396 37.9
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 4.8e-47 194.5 211 51.2
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 3.3e-32 145.2 92 75.0
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.2e-27 128.6 86 67.4
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 4.6e-26 124.8 68 79.4
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 1.0e-25 123.6 110 55.5
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 6.7e-25 120.9 161 50.3
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.3e-24 118.6 99 56.6
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 4.3e-24 118.2 114 54.4
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.3e-23 116.7 111 61.3
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 4.5e-21 108.2 102 52.9
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.2e-18 100.1 81 54.3
TAR629G2211 Trochodendron aralioides HOM05D002089 ORTHO05D022294 3.0e-09 68.9 82 45.1
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 3.3e-08 65.5 74 43.2
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 7.4e-08 64.3 145 29.7


User provided reference genes

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