Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 3.6e-149 531.6 266 100.0
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 4.8e-114 414.8 265 79.2
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.1e-113 413.7 269 79.6
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 2.8e-109 399.1 270 77.4
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 3.0e-108 395.6 271 73.4
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 4.0e-108 395.2 273 75.5
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 5.2e-108 394.8 271 76.0
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 2.3e-100 369.4 270 69.6
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 9.5e-94 347.4 272 64.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 2.1e-93 346.3 273 63.7
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 8.0e-93 344.4 238 71.0
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 1.4e-92 343.6 273 64.8
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.2e-92 341.7 267 65.9
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 5.2e-92 341.7 238 70.2
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 1.2e-91 340.5 246 69.5
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.2e-91 340.5 245 67.8
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 4.4e-91 338.6 270 65.6
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.9e-89 333.2 273 61.9
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 2.4e-89 332.8 235 67.7
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.4e-89 332.8 238 68.9
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 3.2e-89 332.4 238 68.1
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 5.4e-89 331.6 237 67.9
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.0e-89 331.3 243 67.5
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 7.0e-89 331.3 235 69.8
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 9.2e-89 330.9 238 68.5
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 2.7e-88 329.3 240 67.9
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 4.6e-88 328.6 243 66.7
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 4.6e-88 328.6 274 61.3
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 6.0e-88 328.2 239 65.3
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 6.0e-88 328.2 258 65.9
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 1.0e-87 327.4 265 62.3
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 2.3e-87 326.2 244 67.6
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.3e-87 326.2 238 66.8
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 3.0e-87 325.9 267 65.9
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 8.6e-87 324.3 239 65.7
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.9e-86 323.2 245 64.1
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 2.8e-85 319.3 238 65.5
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 4.7e-85 318.5 233 67.8
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 8.1e-85 317.8 268 60.8
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 1.4e-84 317.0 236 66.5
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 2.3e-84 316.2 233 67.4
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 4.0e-84 315.5 236 66.5
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.2e-84 315.1 273 59.7
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 5.2e-84 315.1 230 66.5
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 6.8e-84 314.7 243 64.2
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 8.9e-84 314.3 243 65.8
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.2e-83 313.9 228 67.1
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.2e-83 313.9 278 59.4
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.5e-83 313.5 238 63.9
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 1.5e-83 313.5 233 67.4
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 2.0e-83 313.2 243 64.6
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.0e-83 313.2 273 59.7
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 4.4e-83 312.0 244 64.8
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 5.8e-83 311.6 234 64.1
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.8e-83 311.6 247 61.1
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 7.5e-83 311.2 236 65.7
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-82 310.5 244 64.3
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.9e-82 309.3 258 60.5
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 6.4e-82 308.1 239 68.2
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 6.4e-82 308.1 243 62.1
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 3.2e-81 305.8 232 64.7
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.1e-81 305.4 234 63.7
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 3.5e-80 302.4 243 60.9
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 4.6e-80 302.0 243 60.9
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 5.1e-79 298.5 243 60.1
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 5.1e-79 298.5 243 60.1
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 8.6e-79 297.7 243 61.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 8.6e-79 297.7 243 60.1
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.9e-78 296.6 232 62.1
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.9e-78 296.6 232 62.1
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 3.3e-78 295.8 264 60.6
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 3.3e-78 295.8 247 61.1
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 4.3e-78 295.4 232 61.2
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 4.3e-78 295.4 227 63.0
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 5.6e-78 295.0 242 61.6
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.2e-77 293.9 232 61.2
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.1e-77 293.1 233 61.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 3.6e-77 292.4 231 60.6
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 6.2e-77 291.6 205 70.2
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.1e-76 290.8 233 61.4
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 4.0e-76 288.9 247 58.3
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 5.2e-76 288.5 268 57.8
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 9.9e-75 284.3 224 65.6
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 8.4e-74 281.2 272 54.0
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-73 280.4 226 62.4
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.9e-73 280.0 197 69.0
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 9.2e-73 277.7 197 70.1
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 3.9e-71 272.3 191 69.6
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.1e-68 264.2 259 52.9
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.8e-68 263.5 245 58.0
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.5e-67 260.4 186 69.9
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.4e-65 253.8 227 56.8
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 3.2e-65 252.7 262 52.3
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 5.4e-65 251.9 243 54.3
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 6.0e-64 248.4 245 52.2
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-61 240.7 187 63.6
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.4e-60 237.3 220 56.4
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.4e-60 236.5 189 61.9
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 2.0e-59 233.4 176 71.6
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-59 233.0 182 63.7
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 3.8e-58 229.2 224 54.0
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.0e-52 208.0 204 55.9
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 7.6e-51 204.9 161 64.0
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.7e-47 191.4 219 52.1
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 6.2e-45 185.3 123 72.4
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 2.7e-40 169.9 121 66.9
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-34 150.6 149 53.7
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 6.5e-34 148.7 217 37.3
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.0e-31 139.8 123 58.5
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 3.9e-31 139.4 119 54.6
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.7e-30 135.6 121 56.2
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 7.4e-30 135.2 117 59.0
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.8e-29 132.5 253 38.3
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 7.9e-24 115.2 113 54.9
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-23 114.8 103 57.3
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 9.7e-22 108.2 86 60.5
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.7e-21 106.3 75 66.7
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.3e-21 105.5 72 72.2
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-19 100.9 83 59.0
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.7e-19 98.6 121 47.9
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.4e-17 94.4 98 48.0
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.2e-17 92.8 72 59.7
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.2e-15 85.9 99 49.5
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 8.8e-15 85.1 91 46.2
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.5e-14 84.3 84 47.6
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-13 80.5 98 46.9
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 2.2e-13 80.5 81 51.9
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.7e-13 79.7 67 55.2
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-09 67.4 64 53.1
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.6e-08 64.3 143 30.8
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 4.0e-07 59.7 69 43.5
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 8.8e-07 58.5 31 83.9
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 8.8e-07 58.5 79 41.8
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-06 58.2 53 52.8
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 1.2e-06 58.2 79 41.8
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 1.5e-06 57.8 69 42.0
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 5.7e-06 55.8 215 27.9


User provided reference genes

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