Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 2.2e-202 708.8 353 100.0
Medtr2g089200 Medicago truncatula HOM05D007205 ORTHO05D009175 2.5e-150 535.8 356 77.0
TPR.G18059 Trifolium pratense HOM05D007205 ORTHO05D009175 2.1e-149 532.7 349 76.8
Psat5g266880 Pisum sativum HOM05D007205 ORTHO05D009175 1.2e-141 506.9 354 73.2
Lj3g0018731 Lotus japonicus HOM05D007205 ORTHO05D009175 4.6e-136 488.4 352 69.0
Glyma.13G304100 Glycine max HOM05D007205 ORTHO05D009175 7.1e-121 438.0 359 64.9
arahy.Tifrunner.gnm1.ann1.G6KXX8 Arachis hypogaea HOM05D007205 ORTHO05D009175 9.0e-116 421.0 362 60.8
Phvul.002G284500 Phaseolus vulgaris HOM05D007205 ORTHO05D009175 8.7e-111 404.4 353 61.5
VMungo0251G0055 Vigna mungo HOM05D007205 ORTHO05D009175 5.6e-110 401.7 352 60.8
arahy.Tifrunner.gnm1.ann1.WFU09D Arachis hypogaea HOM05D007205 ORTHO05D009175 9.6e-110 401.0 346 60.4
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 2.0e-107 393.3 356 58.7
Atru.chr6.3107 Acer truncatum HOM05D007205 ORTHO05D009175 4.5e-91 339.0 347 51.0
Manes.12G078600 Manihot esculenta HOM05D007205 ORTHO05D009175 3.3e-86 322.8 347 48.1
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 7.4e-86 321.6 352 48.6
Sabra13G0122300 Salix brachista HOM05D007205 ORTHO05D009175 9.7e-86 321.2 346 48.3
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 2.2e-85 320.1 347 47.8
Potri.013G152200 Populus trichocarpa HOM05D007205 ORTHO05D009175 3.7e-85 319.3 349 48.4
TAR626G1876 Trochodendron aralioides HOM05D007205 ORTHO05D009175 2.4e-84 316.6 355 46.8
Ciclev10018085m.g Citrus clementina HOM05D007205 ORTHO05D009175 3.1e-84 316.2 349 48.7
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 7.7e-83 311.6 347 46.7
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 1.1e-81 307.8 352 47.7
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 3.2e-81 306.2 352 46.0
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 4.2e-81 305.8 351 47.9
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 9.4e-81 304.7 348 45.4
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 1.6e-80 303.9 348 48.0
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 1.0e-79 301.2 356 48.3
Gohir.A03G162500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 3.9e-79 299.3 347 45.5
Nn5g28818 Nelumbo nucifera HOM05D007205 ORTHO05D009175 8.8e-79 298.1 356 43.3
Gohir.D02G185500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 2.2e-77 293.5 347 45.2
Gorai.005G208100 Gossypium raimondii HOM05D007205 ORTHO05D009175 2.2e-77 293.5 347 45.2
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 1.1e-76 291.2 354 44.9
Duzib132G1034 Durio zibethinus HOM05D007205 ORTHO05D009175 3.4e-75 286.2 353 44.5
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 1.0e-74 284.6 349 43.8
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 1.3e-74 284.3 327 48.6
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 5.5e-73 278.9 348 44.5
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 1.4e-71 274.2 300 47.0
CsaV3_7G003940 Cucumis sativus L. HOM05D007205 ORTHO05D009175 2.3e-71 273.5 311 46.0
COL.COLO4_13041 Corchorus olitorius HOM05D007205 ORTHO05D009175 5.2e-71 272.3 332 43.4
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 1.1e-70 271.2 355 45.4
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 4.4e-70 269.2 347 42.9
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 2.2e-69 266.9 303 46.9
Solyc07g053000.1 Solanum lycopersicum HOM05D007205 ORTHO05D009175 2.8e-69 266.5 350 42.9
CAN.G86.36 Capsicum annuum HOM05D007205 ORTHO05D009175 6.3e-69 265.4 345 41.2
FAN14G2816 Fragaria x ananassa HOM05D007205 ORTHO05D009175 2.4e-68 263.5 373 42.6
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 3.1e-68 263.1 354 42.9
Sopen07g026550 Solanum pennellii HOM05D007205 ORTHO05D009175 5.3e-68 262.3 350 42.3
FvH4_6g43900 Fragaria vesca HOM05D007205 ORTHO05D009175 7.0e-68 261.9 373 42.4
THA.LOC104826759 Tarenaya hassleriana HOM05D007205 ORTHO05D009175 2.0e-67 260.4 347 41.8
Nitab4.5_0001134g0050 Nicotiana tabacum HOM05D007205 ORTHO05D009175 7.7e-67 258.5 331 44.4
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 2.9e-66 256.5 326 42.3
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 5.0e-66 255.8 343 40.8
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.6e-64 250.8 338 41.1
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 4.7e-64 249.2 338 40.8
FAN09G0942 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.0e-63 248.1 368 40.8
Aa31sc352G30 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.8e-63 247.3 338 40.5
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 3.0e-63 246.5 349 42.7
BcaB01g02893 Brassica carinata HOM05D007205 ORTHO05D009175 4.0e-63 246.1 355 42.0
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 4.0e-63 246.1 343 41.7
Sp6g35950 Schrenkiella parvula HOM05D007205 ORTHO05D009175 5.2e-63 245.7 348 42.2
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 6.7e-63 245.4 338 40.8
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 2.0e-62 243.8 365 41.4
PSO675G8316 Papaver somniferum HOM05D007205 ORTHO05D009175 4.4e-62 242.7 361 41.8
Aa31sc947G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 9.7e-62 241.5 337 40.7
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 4.8e-61 239.2 343 42.3
BcaC02g10449 Brassica carinata HOM05D007205 ORTHO05D009175 1.1e-60 238.0 353 41.4
A03p03030 Brassica napus HOM05D007205 ORTHO05D009175 1.1e-60 238.0 353 42.8
CARHR206230 Cardamine hirsuta HOM05D007205 ORTHO05D009175 1.4e-60 237.7 351 41.0
PSO017G6138 Papaver somniferum HOM05D007205 ORTHO05D009175 1.4e-60 237.7 362 41.4
C04p28790 Brassica napus HOM05D007205 ORTHO05D009175 1.8e-60 237.3 353 41.4
Carub.0006s0584 Capsella rubella HOM05D007205 ORTHO05D009175 5.3e-60 235.7 347 42.9
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 7.0e-60 235.3 347 40.1
AT5G06920 Arabidopsis thaliana HOM05D007205 ORTHO05D009175 9.1e-60 235.0 356 41.3
Carub.0130s0001 Capsella rubella HOM05D007205 ORTHO05D009175 9.1e-60 235.0 347 42.9
BraA03t09662Z Brassica rapa HOM05D007205 ORTHO05D009175 2.7e-59 233.4 352 42.3
Lsat_1_v5_gn_3_42520 Lactuca sativa HOM05D007205 ORTHO05D009175 1.3e-58 231.1 344 41.0
AL6G17070 Arabidopsis lyrata HOM05D007205 ORTHO05D009175 6.5e-58 228.8 355 40.3
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 6.5e-58 228.8 318 39.6
RcHm_v2.0_Chr6g0278031 Rosa chinensis HOM05D007205 ORTHO05D009175 4.2e-57 226.1 291 42.6
SalBow2G2732 Salvia bowleyana HOM05D007205 ORTHO05D009175 7.2e-57 225.3 343 40.2
HanXRQChr17g0542941 Helianthus annuus HOM05D007205 ORTHO05D009175 8.0e-56 221.9 303 40.9
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 2.0e-54 217.2 310 39.7
Oeu040642.1 Olea europaea HOM05D007205 ORTHO05D009175 7.5e-54 215.3 258 45.7
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 7.0e-52 208.8 320 35.9
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 1.2e-51 208.0 311 39.5
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 7.7e-51 205.3 364 35.2
FAN02G3251 Fragaria x ananassa HOM05D007205 ORTHO05D009175 2.6e-46 190.3 361 38.2
FAN05G5134 Fragaria x ananassa HOM05D007205 ORTHO05D009175 3.7e-45 186.4 362 34.8
Actinidia12481 Actinidia chinensis HOM05D007205 ORTHO05D009175 5.4e-44 182.6 350 36.0
A03p67950 Brassica napus HOM05D007205 ORTHO05D009175 4.3e-41 172.9 239 40.2
BraA01t02676Z Brassica rapa HOM05D007205 ORTHO05D009175 4.3e-41 172.9 239 40.2
FAN05G3426 Fragaria x ananassa HOM05D007205 ORTHO05D009175 3.6e-40 169.9 256 37.5
SEGI_15553 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 9.2e-36 155.2 362 30.4
SEGI_37477 Sequoiadendron giganteum HOM05D007205 ORTHO05D009175 2.1e-32 144.1 356 29.8
unitig_0.g450 Utricularia gibba HOM05D007205 ORTHO05D009175 1.2e-27 128.3 229 34.9
RcHm_v2.0_Chr2g0160671 Rosa chinensis HOM05D007205 ORTHO05D009175 3.9e-26 123.2 143 42.0
RcHm_v2.0_Chr4g0411281 Rosa chinensis HOM05D007205 ORTHO05D009175 8.6e-26 122.1 152 42.8
RcHm_v2.0_Chr1g0324271 Rosa chinensis HOM05D007205 ORTHO05D009175 2.5e-25 120.6 152 42.8
SGA_v2.0_scaffold70G23481 Striga asiatica HOM05D007205 ORTHO05D009175 1.9e-20 104.4 248 32.3
BcaB01g06014 Brassica carinata HOM05D007205 ORTHO05D009175 6.6e-18 95.9 239 34.7
Duzib168G1669 Durio zibethinus HOM05D007205 ORTHO05D009175 1.2e-16 91.7 150 37.3
BcaB01g05708 Brassica carinata HOM05D007205 ORTHO05D009175 4.7e-16 89.7 190 33.2
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 1.3e-13 81.6 307 27.7
Aa31LG5G24200 Aethionema arabicum HOM05D007205 ORTHO05D009175 2.9e-13 80.5 105 39.0
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 6.4e-13 79.3 308 26.3
CAN.G86.39 Capsicum annuum HOM05D007205 ORTHO05D009175 1.1e-12 78.6 124 37.9
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.1e-12 78.6 305 27.2
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 1.9e-12 77.8 279 28.0
FAN05G5380 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.4e-12 77.4 319 26.6
FAN02G0051 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.4e-12 76.3 311 26.0
FAN05G5197 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.2e-12 75.5 319 26.3
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 1.6e-11 74.7 309 27.5
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 4.6e-11 73.2 363 25.1
FAN14G2593 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.6e-11 73.2 317 25.6
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 7.8e-11 72.4 340 23.2
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 1.0e-10 72.0 317 26.2
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 1.3e-10 71.6 303 27.7
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 1.3e-10 71.6 307 25.4
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.3e-10 71.6 322 25.8
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 1.7e-10 71.2 267 25.8
Peaxi162Scf01343g00112 Petunia axillaris HOM05D010623 ORTHO05D012718 1.7e-10 71.2 298 25.5
SGA_v2.0_scaffold170G38831 Striga asiatica HOM05D002727 ORTHO05D002856 2.3e-10 70.9 341 24.3
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 3.9e-10 70.1 344 23.0
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 5.1e-10 69.7 341 25.2
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 6.6e-10 69.3 350 24.9
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 8.7e-10 68.9 341 25.2
Lj6g0022093 Lotus japonicus HOM05D050805 ORTHO05D236860 3.3e-09 67.0 40 75.0
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 3.3e-09 67.0 309 26.2
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 4.3e-09 66.6 347 25.1
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 5.6e-09 66.2 315 25.1
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 5.6e-09 66.2 307 25.1
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 7.3e-09 65.9 344 24.1
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 7.3e-09 65.9 293 24.9
Lsat_1_v5_gn_5_36701 Lactuca sativa HOM05D006072 ORTHO05D007363 7.3e-09 65.9 342 27.2
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 7.3e-09 65.9 349 24.6
Rhsim09G0083300 Rhododendron simsii HOM05D006072 ORTHO05D007363 7.3e-09 65.9 347 24.2
vmacro13591 Vaccinium macrocarpon HOM05D010623 ORTHO05D012718 7.3e-09 65.9 336 24.1
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 7.3e-09 65.9 344 25.3
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 9.6e-09 65.5 138 29.7
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.2e-08 65.1 343 25.7
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 1.2e-08 65.1 129 30.2
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 1.6e-08 64.7 303 27.4
THA.LOC104824147 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 2.8e-08 63.9 306 26.5
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 3.6e-08 63.5 298 22.1
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 4.7e-08 63.2 298 23.5
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.1e-08 62.4 300 23.0
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.4e-07 61.6 299 23.1
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 1.8e-07 61.2 273 26.4
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 3.1e-07 60.5 129 34.1
Nn1g06067 Nelumbo nucifera HOM05D005305 ORTHO05D006394 6.9e-07 59.3 131 31.3
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 9.0e-07 58.9 330 24.8
CsaV3_6G037300 Cucumis sativus L. HOM05D005305 ORTHO05D006394 9.0e-07 58.9 134 30.6
Lalb_Chr15g0090581 Lupinus albus HOM05D005305 ORTHO05D006394 9.0e-07 58.9 141 31.2
Oeu035198.1 Olea europaea HOM05D005305 ORTHO05D006394 9.0e-07 58.9 146 29.5
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 1.2e-06 58.5 96 31.2
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.2e-06 58.5 96 31.2
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.2e-06 58.5 101 31.7
Lj1C922T21 Lonicera japonica HOM05D005305 ORTHO05D006394 1.2e-06 58.5 135 31.1
Medtr5g044170 Medicago truncatula HOM05D002727 ORTHO05D002856 1.5e-06 58.2 271 25.1
Sed0001621 Sechium edule HOM05D005305 ORTHO05D006394 1.5e-06 58.2 142 28.9
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 1.5e-06 58.2 269 24.9
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 2.0e-06 57.8 96 31.2
Pp3c13_8280 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.0e-06 57.8 136 29.4
Migut.L00049 Erythranthe guttata HOM05D005305 ORTHO05D006394 2.6e-06 57.4 100 37.0
FAN09G3462 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-06 57.4 258 25.2
Psat1g219600 Pisum sativum HOM05D005305 ORTHO05D006394 2.6e-06 57.4 139 32.4
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 3.4e-06 57.0 269 21.9
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.4e-06 57.0 299 22.1
Potri.017G111600 Populus trichocarpa HOM05D002727 ORTHO05D002856 7.6e-06 55.8 133 30.1
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 9.9e-06 55.5 323 24.8
Pp3c26_11940 Physcomitrium patens HOM05D022662 ORTHO05D006223 9.9e-06 55.5 136 25.7
Sabra17G0092700 Salix brachista HOM05D002727 ORTHO05D002856 9.9e-06 55.5 297 26.9
SGA_v2.0_scaffold21G09432 Striga asiatica HOM05D049040 ORTHO05D009175 9.9e-06 55.5 85 35.3


User provided reference genes

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