Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 0.0e+00 1296.6 664 100.0
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 6.0e-254 880.9 636 75.0
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 4.1e-247 858.2 634 72.4
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.3e-245 853.2 635 72.3
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 3.0e-245 852.0 642 71.7
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 4.3e-244 848.2 619 73.5
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 4.3e-244 848.2 632 72.5
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 4.3e-244 848.2 632 72.2
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.0e-233 812.8 631 69.6
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 4.8e-227 791.6 632 68.4
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 3.2e-207 725.7 645 63.6
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 9.6e-204 714.1 647 62.3
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.4e-202 710.3 640 59.1
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.4e-201 705.7 623 60.7
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.7e-200 703.4 632 59.7
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.2e-198 697.2 637 59.5
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 3.9e-197 692.2 633 57.5
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 2.2e-195 686.4 634 59.0
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 8.2e-195 684.5 627 58.5
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.8e-194 683.3 651 57.0
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.5e-193 680.2 645 61.1
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.6e-193 679.5 627 59.5
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 3.4e-193 679.1 632 58.2
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 5.9e-193 678.3 637 58.2
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.7e-192 676.8 637 58.1
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 5.0e-192 675.2 659 56.4
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.6e-190 669.1 634 57.7
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 7.9e-190 667.9 633 56.4
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 6.7e-189 664.8 618 57.9
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.5e-188 663.7 645 57.4
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 5.7e-188 661.8 627 57.7
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 5.7e-188 661.8 634 56.3
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 8.2e-187 657.9 627 56.3
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 6.9e-186 654.8 629 56.8
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 9.1e-186 654.4 650 56.8
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.5e-185 653.7 629 57.1
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.0e-184 651.0 629 56.8
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.2e-184 649.8 637 56.2
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 2.2e-184 649.8 618 56.5
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 8.5e-184 647.9 632 55.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 5.5e-183 645.2 678 52.5
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 5.5e-183 645.2 635 57.2
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 5.5e-183 645.2 622 56.1
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.2e-182 644.0 618 56.3
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.5e-180 637.1 614 57.2
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.0e-180 636.7 641 55.1
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 3.7e-179 632.5 646 54.6
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 6.3e-179 631.7 635 55.1
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.4e-178 629.8 633 55.0
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.7e-176 623.6 642 55.0
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 2.9e-176 622.9 635 54.0
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 7.2e-175 618.2 630 55.2
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.2e-174 617.5 628 54.0
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 6.1e-174 615.1 643 54.3
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.4e-173 614.0 626 55.0
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 8.8e-173 611.3 642 53.7
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 2.6e-172 609.8 629 53.6
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.3e-172 609.4 663 52.6
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 7.5e-172 608.2 629 54.1
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 2.2e-171 606.7 626 53.2
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 8.2e-171 604.7 614 54.9
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 8.2e-171 604.7 621 54.1
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-170 604.4 633 53.2
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 7.7e-169 598.2 625 53.4
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 7.7e-169 598.2 629 53.3
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.0e-168 597.8 628 54.3
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 1.3e-168 597.4 612 53.6
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.7e-168 597.0 642 53.0
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.7e-168 597.0 642 53.0
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 2.9e-168 596.3 626 53.8
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 5.5e-167 592.0 628 54.8
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 5.5e-167 592.0 610 54.3
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 9.4e-167 591.3 625 53.9
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.1e-166 590.1 616 52.4
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.8e-165 587.0 628 54.8
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 4.0e-165 585.9 633 52.1
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.2e-164 584.3 629 52.1
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.0e-164 583.6 622 53.1
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 4.4e-164 582.4 628 52.5
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 7.5e-164 581.6 630 52.4
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 9.8e-164 581.3 625 52.6
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 1.7e-163 580.5 611 51.6
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 3.5e-161 572.8 636 51.6
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 7.7e-161 571.6 618 51.3
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.0e-160 571.2 616 51.8
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 2.9e-160 569.7 623 52.5
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.9e-159 567.0 639 49.3
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 4.2e-159 565.8 633 51.0
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 7.2e-159 565.1 623 52.0
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.8e-157 560.5 642 51.2
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 3.0e-157 559.7 611 52.4
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.2e-156 557.8 521 58.0
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 7.5e-156 555.1 624 50.6
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.4e-154 550.8 624 50.6
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.8e-150 536.6 634 50.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 3.7e-147 526.2 635 49.9
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 7.8e-145 518.5 616 49.7
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 2.1e-142 510.4 605 48.1
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 4.7e-142 509.2 622 46.0
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 8.0e-142 508.4 611 49.3
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.4e-141 507.7 629 49.8
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.4e-141 507.7 639 45.4
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.1e-141 506.5 631 48.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 6.8e-141 505.4 613 48.8
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.9e-138 497.3 640 45.8
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 8.6e-136 488.4 611 47.6
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.4e-133 481.1 633 47.6
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.1e-125 453.4 535 51.8
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 9.2e-122 441.8 513 50.5
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 2.7e-121 440.3 615 43.6
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.4e-106 390.6 654 38.7
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.5e-105 386.7 664 39.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.8e-101 374.4 622 41.2
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 6.9e-101 372.5 207 95.2
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.3e-96 358.2 425 50.1
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.9e-95 354.4 375 53.9
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.4e-85 321.6 410 47.6
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.4e-74 285.0 582 36.4
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 3.0e-72 277.3 307 50.5
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.3e-67 261.9 353 44.8
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 6.7e-64 249.6 369 42.3
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.0e-60 238.0 343 42.9
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 7.7e-60 236.1 398 39.2
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.2e-55 222.2 201 58.2
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 5.3e-53 213.4 199 58.3
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 5.0e-51 206.8 563 28.8
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.1e-50 205.7 234 48.3
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 1.0e-48 199.1 343 35.9
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 1.4e-45 188.7 119 78.2
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 5.4e-45 186.8 183 47.5
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 6.8e-40 169.9 199 47.2
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 2.8e-38 164.5 164 59.1
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.9e-38 163.7 120 65.0
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.8e-35 154.1 140 57.9
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 6.6e-35 153.3 152 48.7
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.9e-34 151.8 136 56.6
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 4.3e-34 150.6 138 57.2
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 7.3e-34 149.8 112 64.3
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.0e-31 141.7 359 29.0
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.9e-30 137.1 289 33.2
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.3e-27 128.3 164 47.6
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 8.6e-27 126.3 156 48.1
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.3e-26 124.4 163 46.6
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 5.6e-26 123.6 200 41.5
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 1.6e-25 122.1 171 43.3
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.5e-23 115.5 79 68.4
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 3.4e-23 114.4 79 68.4
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 4.4e-23 114.0 65 84.6
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.7e-22 112.1 100 57.0
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.0e-20 105.1 161 44.1
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 3.5e-20 104.4 153 43.8
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.5e-18 98.2 66 69.7
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 4.3e-18 97.4 70 65.7
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 4.3e-18 97.4 109 46.8
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 3.6e-17 94.4 156 40.4
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 3.6e-17 94.4 175 34.9
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 4.4e-15 87.4 69 68.1
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.3e-14 85.9 62 69.4
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 2.9e-14 84.7 61 75.4
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 4.9e-14 84.0 62 69.4
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.0e-11 76.3 64 60.9
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 2.4e-08 65.1 49 59.2
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 8.9e-08 63.2 48 58.3
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 4.4e-07 60.8 39 76.9
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 6.4e-06 57.0 120 34.2


User provided reference genes

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