Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 5.6e-46 187.2 90 100.0
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 7.8e-40 166.8 88 90.9
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 3.6e-37 157.9 90 84.4
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 1.1e-36 156.4 88 83.0
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 1.2e-35 152.9 92 80.4
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 4.4e-35 151.0 88 79.5
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 7.5e-35 150.2 89 83.1
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 2.2e-34 148.7 92 77.2
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 1.4e-33 146.0 92 76.1
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 1.9e-33 145.6 88 78.4
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 1.9e-33 145.6 88 77.3
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 3.3e-30 134.8 91 70.3
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 7.3e-30 133.7 90 73.3
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 1.3e-26 122.9 92 67.4
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 2.3e-23 112.1 88 60.2
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 5.1e-23 110.9 91 57.1
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 5.6e-22 107.5 91 57.1
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 7.3e-22 107.1 91 53.8
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 9.5e-22 106.7 91 59.3
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.6e-21 105.9 91 58.2
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.6e-21 105.9 91 58.2
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 2.1e-21 105.5 91 52.7
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 2.1e-21 105.5 91 56.0
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 8.1e-21 103.6 88 55.7
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.4e-20 102.8 91 51.6
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.4e-20 102.8 94 55.3
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.4e-20 102.8 91 58.2
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 1.8e-20 102.4 90 60.0
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 4.0e-20 101.3 91 57.1
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 5.2e-20 100.9 87 56.3
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 5.2e-20 100.9 102 51.0
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 5.2e-20 100.9 90 56.7
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 6.8e-20 100.5 92 52.2
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 8.9e-20 100.1 93 50.5
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 8.9e-20 100.1 94 53.2
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 5.8e-19 97.4 93 50.5
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.3e-18 96.3 89 55.1
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 2.2e-18 95.5 91 56.0
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 2.9e-18 95.1 89 52.8
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 6.4e-18 94.0 91 50.5
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.4e-17 92.8 97 49.5
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.4e-17 92.8 88 52.3
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.9e-17 92.4 91 53.8
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 4.2e-17 91.3 88 54.5
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.6e-16 89.4 92 48.9
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 2.1e-16 89.0 88 50.0
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 3.5e-16 88.2 88 48.9
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 3.5e-16 88.2 90 54.4
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 3.5e-16 88.2 94 45.7
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.0e-16 87.4 93 45.2
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 6.0e-16 87.4 91 52.7
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 6.0e-16 87.4 89 50.6
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 1.0e-15 86.7 91 48.4
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.0e-15 86.7 94 44.7
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 1.0e-15 86.7 94 44.7
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 1.3e-15 86.3 91 50.5
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 1.3e-15 86.3 91 50.5
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.7e-15 85.9 91 49.5
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.3e-15 85.5 88 46.6
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.3e-15 85.5 91 48.4
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 6.6e-15 84.0 83 47.0
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.5e-14 82.8 89 50.6
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 1.9e-14 82.4 86 46.5
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 1.9e-14 82.4 82 48.8
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 2.5e-14 82.0 93 49.5
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 2.5e-14 82.0 93 49.5
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 2.5e-14 82.0 91 48.4
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 2.5e-14 82.0 83 56.6
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 3.3e-14 81.6 90 48.9
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 3.3e-14 81.6 89 46.1
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.3e-14 81.3 97 45.4
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 4.3e-14 81.3 93 47.3
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 9.6e-14 80.1 88 50.0
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-13 79.3 98 43.9
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.6e-13 79.3 89 48.3
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 3.6e-13 78.2 96 42.7
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 4.7e-13 77.8 89 46.1
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 6.2e-13 77.4 89 47.2
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 6.2e-13 77.4 93 48.4
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 8.1e-13 77.0 88 46.6
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 8.1e-13 77.0 83 48.2
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 1.1e-12 76.6 92 47.8
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-12 76.6 98 42.9
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 1.1e-12 76.6 98 45.9
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 1.4e-12 76.3 90 46.7
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 1.4e-12 76.3 94 46.8
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 1.4e-12 76.3 94 46.8
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 1.4e-12 76.3 90 46.7
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.8e-12 75.9 100 43.0
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 3.1e-12 75.1 92 45.7
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 3.1e-12 75.1 92 45.7
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 3.1e-12 75.1 92 45.7
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 3.1e-12 75.1 92 45.7
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 3.1e-12 75.1 92 45.7
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 5.3e-12 74.3 91 46.2
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 5.3e-12 74.3 90 43.3
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 5.3e-12 74.3 90 43.3
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 5.3e-12 74.3 93 47.3
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 6.9e-12 73.9 89 46.1
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 1.5e-11 72.8 94 43.6
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 1.5e-11 72.8 89 42.7
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.4e-11 71.6 101 39.6
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 3.4e-11 71.6 89 44.9
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 5.8e-11 70.9 92 46.7
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 7.6e-11 70.5 97 45.4
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 1.7e-10 69.3 95 43.2
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.7e-10 69.3 90 42.2
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 2.2e-10 68.9 87 48.3
Glyma.06G298400 Glycine max HOM05D004838 ORTHO05D005373 2.9e-10 68.6 88 45.5
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 3.8e-10 68.2 91 45.1
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 4.9e-10 67.8 91 44.0
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.9e-09 65.9 90 43.3
Lalb_Chr22g0356331 Lupinus albus HOM05D004838 ORTHO05D005373 4.2e-09 64.7 83 43.4
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 4.2e-09 64.7 87 41.4
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 9.3e-09 63.5 82 45.1
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 9.3e-09 63.5 88 39.8
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.1e-08 62.4 87 40.2
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.7e-08 62.0 92 39.1
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 3.5e-08 61.6 89 40.4
CDE05G2085 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 3.5e-08 61.6 78 41.0
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.5e-08 61.6 90 42.2
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.5e-08 61.6 90 43.3
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 4.6e-08 61.2 91 38.5
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.0e-08 60.8 93 36.6
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.0e-07 60.1 75 42.7
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 1.3e-07 59.7 88 39.8
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 1.7e-07 59.3 88 37.5
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 2.3e-07 58.9 88 37.5
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 3.9e-07 58.2 87 36.8
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 6.6e-07 57.4 88 35.2
Lj3g0021008 Lotus japonicus HOM05D004838 ORTHO05D005373 6.6e-07 57.4 91 42.9
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 6.6e-07 57.4 89 39.3
ECA246G1803 Erigeron canadensis HOM05D004838 ORTHO05D005373 8.7e-07 57.0 89 34.8
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 8.7e-07 57.0 90 40.0
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 8.7e-07 57.0 89 38.2
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 1.1e-06 56.6 91 35.2
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 1.5e-06 56.2 84 39.3
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 1.9e-06 55.8 81 40.7
Cc05_g06130 Coffea canephora HOM05D000831 ORTHO05D000660 3.3e-06 55.1 92 33.7
Cc05_g06150 Coffea canephora HOM05D000831 ORTHO05D000660 3.3e-06 55.1 92 33.7
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 3.3e-06 55.1 82 42.7
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 4.3e-06 54.7 83 37.3
MELO3C013538.2 Cucumis melo HOM05D031423 ORTHO05D034979 5.6e-06 54.3 93 37.6
Gohir.A05G166000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 5.6e-06 54.3 88 34.1
Lsat_1_v5_gn_3_40521 Lactuca sativa HOM05D000831 ORTHO05D000660 5.6e-06 54.3 89 36.0
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 5.6e-06 54.3 87 35.6
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 5.6e-06 54.3 89 36.0
CDE05G0592 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 7.3e-06 53.9 79 39.2
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 9.6e-06 53.5 71 42.3
Nn4g25531 Nelumbo nucifera HOM05D004838 ORTHO05D005373 9.6e-06 53.5 66 40.9
PSO017G6624 Papaver somniferum HOM05D000831 ORTHO05D000660 9.6e-06 53.5 95 36.8


User provided reference genes

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