Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 4.6e-138 494.6 252 100.0
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 6.7e-73 278.1 282 64.2
Medtr2g090150 Medicago truncatula HOM05D010177 ORTHO05D003109 1.8e-62 243.4 288 56.2
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 3.7e-47 192.6 279 51.3
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 4.8e-39 165.6 261 47.9
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 3.8e-36 156.0 282 46.1
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 2.8e-34 149.8 295 43.7
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 8.0e-34 148.3 256 46.1
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 1.8e-33 147.1 266 45.5
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 1.1e-30 137.9 275 43.3
Glyma.U031322 Glycine max HOM05D010177 ORTHO05D003109 4.1e-30 136.0 259 44.0
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 5.4e-30 135.6 300 42.0
TPR.G40438 Trifolium pratense HOM05D010177 ORTHO05D003109 1.7e-28 130.6 154 59.7
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 2.5e-27 126.7 297 37.0
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 3.3e-27 126.3 319 37.0
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 1.0e-25 121.3 312 40.1
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 6.8e-25 118.6 327 37.6
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 2.9e-23 113.2 298 36.2
Phvul.005G106600 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 3.7e-23 112.8 262 38.9
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 4.0e-17 92.8 296 33.1
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 1.5e-16 90.9 302 35.1
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 4.4e-16 89.4 319 31.7
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 6.4e-15 85.5 292 33.2
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.1e-14 82.8 276 35.1
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.1e-14 82.8 276 35.1
VMungo1127G1338 Vigna mungo HOM05D010177 ORTHO05D003109 4.1e-14 82.8 324 31.8
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.6e-13 79.3 319 31.3
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.3e-12 77.8 273 34.1
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 3.0e-12 76.6 271 32.1
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 1.1e-11 74.7 318 32.7
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 1.1e-11 74.7 270 32.6
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.9e-11 73.9 226 35.0
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.5e-11 73.6 302 32.8
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 4.3e-11 72.8 276 30.8
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 4.3e-11 72.8 320 30.0
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 5.6e-11 72.4 274 33.6
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.2e-10 71.2 289 33.6
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 1.2e-10 71.2 307 32.2
Medtr4g046123 Medicago truncatula HOM05D010177 ORTHO05D003109 1.6e-10 70.9 363 29.5
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.8e-10 70.1 289 33.9
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 2.8e-10 70.1 285 32.6
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 4.7e-10 69.3 299 33.4
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 4.7e-10 69.3 289 33.9
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 6.2e-10 68.9 314 31.8
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 6.2e-10 68.9 272 30.5
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 6.2e-10 68.9 318 29.6
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 8.1e-10 68.6 297 32.0
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.1e-09 68.2 282 33.0
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 1.4e-09 67.8 277 30.7
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 2.3e-09 67.0 289 33.6
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 3.1e-09 66.6 272 32.4
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 4.0e-09 66.2 320 30.3
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 5.2e-09 65.9 285 29.8
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 6.8e-09 65.5 295 30.5
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 6.8e-09 65.5 249 33.7
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 6.8e-09 65.5 302 31.5
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.2e-08 64.7 291 32.0
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.5e-08 64.3 302 29.1
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 2.0e-08 63.9 282 29.1
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 2.0e-08 63.9 297 31.3
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 2.6e-08 63.5 296 32.1
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 2.6e-08 63.5 279 32.6
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 2.6e-08 63.5 326 28.5
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 2.6e-08 63.5 319 30.7
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 7.6e-08 62.0 204 35.8
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 7.6e-08 62.0 272 32.0
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 7.6e-08 62.0 292 27.7
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.6e-08 62.0 291 27.5
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 9.9e-08 61.6 302 31.1
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.3e-07 61.2 290 27.6
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.3e-07 61.2 328 29.0
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 1.7e-07 60.8 279 31.2
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 2.2e-07 60.5 286 29.0
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 2.2e-07 60.5 324 29.3
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 2.2e-07 60.5 271 33.6
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 2.9e-07 60.1 319 30.4
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 2.9e-07 60.1 296 31.4
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 3.7e-07 59.7 313 30.7
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 3.7e-07 59.7 311 30.5
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 4.9e-07 59.3 306 29.1
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.9e-07 59.3 308 28.6
TPR.G21670 Trifolium pratense HOM05D010177 ORTHO05D003109 8.3e-07 58.5 289 29.8
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 1.1e-06 58.2 278 31.7
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 1.1e-06 58.2 278 31.7
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 1.1e-06 58.2 278 31.7
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.1e-06 58.2 294 30.3
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 1.1e-06 58.2 250 32.0
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.4e-06 57.8 283 32.2
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.4e-06 57.8 326 27.6
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.4e-06 57.8 312 30.1
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.4e-06 57.8 312 30.1
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 1.9e-06 57.4 251 31.5
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.4e-06 57.0 276 30.4
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 2.4e-06 57.0 232 32.8
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.4e-06 57.0 331 27.5
Potri.005G086300 Populus trichocarpa HOM05D010652 ORTHO05D003109 2.4e-06 57.0 228 32.9
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 2.4e-06 57.0 329 26.1
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 3.2e-06 56.6 266 30.8
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 4.1e-06 56.2 280 30.0
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 4.1e-06 56.2 322 27.6
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.1e-06 56.2 278 32.0
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 4.1e-06 56.2 278 32.0
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 5.4e-06 55.8 286 28.3
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 5.4e-06 55.8 297 28.6
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 5.4e-06 55.8 306 29.1
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 7.1e-06 55.5 206 29.6
Medtr3g083320 Medicago truncatula HOM05D058796 ORTHO05D003109 9.2e-06 55.1 86 48.8


User provided reference genes

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