Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01501_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 1.5e-27 125.6 68 100.0
Medtr2g090340 Medicago truncatula HOM05D005953 ORTHO05D004056 2.3e-20 101.7 71 81.7
Psat0s741g0120 Pisum sativum HOM05D005953 ORTHO05D004056 2.2e-18 95.1 68 77.9
arahy.Tifrunner.gnm1.ann1.XD6XV6 Arachis hypogaea HOM05D005953 ORTHO05D004056 1.2e-13 79.3 73 67.1
arahy.Tifrunner.gnm1.ann1.RLZ54R Arachis hypogaea HOM05D005953 ORTHO05D004056 8.0e-13 76.6 73 65.8
Lalb_Chr14g0366901 Lupinus albus HOM05D005953 ORTHO05D004056 1.2e-11 72.8 74 66.2
Atru.chr6.2998 Acer truncatum HOM05D005953 ORTHO05D004056 1.5e-11 72.4 76 61.8
Lalb_Chr03g0029431 Lupinus albus HOM05D005953 ORTHO05D004056 2.0e-11 72.0 69 66.7
Ciclev10017361m.g Citrus clementina HOM05D005953 ORTHO05D004056 4.4e-11 70.9 78 59.0
HanXRQChr17g0541941 Helianthus annuus HOM05D005953 ORTHO05D004056 4.4e-11 70.9 77 58.4
Lj3g0009023 Lotus japonicus HOM05D005953 ORTHO05D004056 5.7e-11 70.5 71 64.8
Migut.H01186 Erythranthe guttata HOM05D005953 ORTHO05D004056 7.5e-11 70.1 71 62.0
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 1.3e-10 69.3 79 57.0
Glyma.12G112600 Glycine max HOM05D005953 ORTHO05D004056 6.3e-10 67.0 72 59.7
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 6.3e-10 67.0 79 57.0
Nn1g06570 Nelumbo nucifera HOM05D005953 ORTHO05D004056 1.4e-09 65.9 82 52.4
arahy.Tifrunner.gnm1.ann1.P9B1J4 Arachis hypogaea HOM05D005953 ORTHO05D004056 1.8e-09 65.5 73 58.9
Gohir.A04G103800 Gossypium hirsutum HOM05D005953 ORTHO05D004056 1.8e-09 65.5 74 60.8
Hma1.2p1_1201F.1_g266560 Hydrangea macrophylla HOM05D005953 ORTHO05D004056 1.8e-09 65.5 73 58.9
Potri.019G100601 Populus trichocarpa HOM05D005953 ORTHO05D004056 1.8e-09 65.5 70 58.6
Gohir.D04G143500 Gossypium hirsutum HOM05D005953 ORTHO05D004056 2.4e-09 65.1 74 60.8
Gorai.012G128900 Gossypium raimondii HOM05D005953 ORTHO05D004056 2.4e-09 65.1 74 60.8
SalBow1G2785 Salvia bowleyana HOM05D005953 ORTHO05D004056 3.1e-09 64.7 72 58.3
Oeu045817.1 Olea europaea HOM05D005953 ORTHO05D004056 4.1e-09 64.3 75 54.7
Phvul.011G114200 Phaseolus vulgaris HOM05D005953 ORTHO05D004056 5.4e-09 63.9 73 61.6
Sabra13G0111400 Salix brachista HOM05D005953 ORTHO05D004056 7.0e-09 63.5 67 58.2
ClCG07G002930 Citrullus lanatus HOM05D005953 ORTHO05D004056 9.1e-09 63.2 80 51.2
GSVIVG01020541001 Vitis vinifera HOM05D005953 ORTHO05D004056 9.1e-09 63.2 79 55.7
HanXRQChr06g0171331 Helianthus annuus HOM05D005953 ORTHO05D004056 1.2e-08 62.8 76 57.9
Nitab4.5_0002575g0070 Nicotiana tabacum HOM05D005953 ORTHO05D004056 1.6e-08 62.4 77 54.5
QL02p049480 Quercus lobata HOM05D005953 ORTHO05D004056 1.6e-08 62.4 72 55.6
QL08p038675 Quercus lobata HOM05D005953 ORTHO05D004056 1.6e-08 62.4 72 55.6
Carub.0007s1247 Capsella rubella HOM05D005953 ORTHO05D004056 2.0e-08 62.0 80 53.8
MELO3C018738.2 Cucumis melo HOM05D005953 ORTHO05D004056 2.0e-08 62.0 81 49.4
CsaV3_7G004410 Cucumis sativus L. HOM05D005953 ORTHO05D004056 2.0e-08 62.0 80 50.0
Lsat_1_v5_gn_8_134201 Lactuca sativa HOM05D005953 ORTHO05D004056 2.0e-08 62.0 75 54.7
Nitab4.5_0002253g0010 Nicotiana tabacum HOM05D005953 ORTHO05D004056 2.0e-08 62.0 78 53.8
Sed0013976 Sechium edule HOM05D005953 ORTHO05D004056 2.7e-08 61.6 75 53.3
AT4G28290 Arabidopsis thaliana HOM05D005953 ORTHO05D004056 4.5e-08 60.8 81 53.1
arahy.Tifrunner.gnm1.ann1.GJ3E3V Arachis hypogaea HOM05D005953 ORTHO05D004056 4.5e-08 60.8 74 58.1
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 4.5e-08 60.8 80 52.5
Sed0015284 Sechium edule HOM05D005953 ORTHO05D004056 4.5e-08 60.8 72 51.4
Aqoxy1G02469 Aquilegia oxysepala HOM05D005953 ORTHO05D004056 5.9e-08 60.5 82 51.2
BcaB03g12563 Brassica carinata HOM05D005953 ORTHO05D004056 5.9e-08 60.5 81 49.4
BcaB03g12564 Brassica carinata HOM05D005953 ORTHO05D004056 5.9e-08 60.5 81 49.4
MELO3C013618.2 Cucumis melo HOM05D005953 ORTHO05D004056 5.9e-08 60.5 75 58.7
Sp7g26250 Schrenkiella parvula HOM05D005953 ORTHO05D004056 5.9e-08 60.5 75 52.0
MD06G1122200 Malus domestica HOM05D008304 ORTHO05D004056 7.7e-08 60.1 70 55.7
Manes.12G089522 Manihot esculenta HOM05D005953 ORTHO05D004056 7.7e-08 60.1 76 50.0
Actinidia09855 Actinidia chinensis HOM05D005953 ORTHO05D004056 1.0e-07 59.7 72 51.4
DCAR_009746 Daucus carota HOM05D005953 ORTHO05D004056 1.0e-07 59.7 72 50.0
PGSC0003DMG400018306 Solanum tuberosum HOM05D005953 ORTHO05D004056 1.3e-07 59.3 76 53.9
Atru.chr9.1863 Acer truncatum HOM05D008304 ORTHO05D004056 1.7e-07 58.9 65 56.9
MBI07_g12792_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 1.7e-07 58.9 82 51.2
MD14G1138600 Malus domestica HOM05D008304 ORTHO05D004056 1.7e-07 58.9 70 54.3
arahy.Tifrunner.gnm1.ann1.4Y3SQC Arachis hypogaea HOM05D005953 ORTHO05D004056 2.3e-07 58.5 75 58.7
Ca_17688_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 2.3e-07 58.5 70 60.0
ECA246G2973 Erigeron canadensis HOM05D005953 ORTHO05D004056 2.3e-07 58.5 76 53.9
Hund01100 Selenicereus undatus HOM05D005953 ORTHO05D004056 2.3e-07 58.5 68 51.5
Peaxi162Scf00132g00229 Petunia axillaris HOM05D005953 ORTHO05D004056 2.9e-07 58.2 74 51.4
TAR626G0584 Trochodendron aralioides HOM05D005953 ORTHO05D004056 2.9e-07 58.2 78 50.0
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 3.8e-07 57.8 76 52.6
C01p24770 Brassica napus HOM05D005953 ORTHO05D004056 5.0e-07 57.4 80 52.5
Gorai.005G201700 Gossypium raimondii HOM05D025024 ORTHO05D004056 5.0e-07 57.4 74 52.7
Sopen07g028000 Solanum pennellii HOM05D005953 ORTHO05D004056 5.0e-07 57.4 74 54.1
BolC1t02424H Brassica oleracea HOM05D005953 ORTHO05D004056 6.6e-07 57.0 80 52.5
Gohir.D02G180001 Gossypium hirsutum HOM05D025024 ORTHO05D004056 6.6e-07 57.0 74 52.7
Solyc07g054060.3 Solanum lycopersicum HOM05D005953 ORTHO05D004056 6.6e-07 57.0 74 54.1
BcaC09g50494 Brassica carinata HOM05D005953 ORTHO05D004056 8.6e-07 56.6 80 52.5
A01p19690 Brassica napus HOM05D005953 ORTHO05D004056 8.6e-07 56.6 80 52.5
BraA01t01902Z Brassica rapa HOM05D005953 ORTHO05D004056 8.6e-07 56.6 80 52.5
ClCG02G017620 Citrullus lanatus HOM05D005953 ORTHO05D004056 8.6e-07 56.6 76 48.7
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 8.6e-07 56.6 76 51.3
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 8.6e-07 56.6 76 51.3
Lsat_1_v5_gn_3_37261 Lactuca sativa HOM05D005953 ORTHO05D004056 8.6e-07 56.6 79 50.6
Psat2g130600 Pisum sativum HOM05D008304 ORTHO05D004056 8.6e-07 56.6 69 56.5
AL7G24310 Arabidopsis lyrata HOM05D005953 ORTHO05D004056 1.5e-06 55.8 81 50.6
BraA08t33974Z Brassica rapa HOM05D005953 ORTHO05D004056 1.5e-06 55.8 75 49.3
Cfa014612 Carpinus fangiana HOM05D005953 ORTHO05D004056 1.9e-06 55.5 73 49.3
FvH4_5g10570 Fragaria vesca HOM05D008304 ORTHO05D004056 1.9e-06 55.5 68 50.0
FAN04G0709 Fragaria x ananassa HOM05D008304 ORTHO05D012179 1.9e-06 55.5 68 50.0
FAN13G2184 Fragaria x ananassa HOM05D008304 ORTHO05D012179 1.9e-06 55.5 68 50.0
FAN18G4101 Fragaria x ananassa HOM05D008304 ORTHO05D012179 1.9e-06 55.5 68 50.0
Gohir.A03G156801 Gossypium hirsutum HOM05D025024 ORTHO05D004056 1.9e-06 55.5 74 51.4
Potri.019G111501 Populus trichocarpa HOM05D005953 ORTHO05D004056 1.9e-06 55.5 73 50.7
BcaC07g38320 Brassica carinata HOM05D005953 ORTHO05D004056 2.5e-06 55.1 78 50.0
CiPaw.04G125700 Carya illinoinensis HOM05D005953 ORTHO05D004056 2.5e-06 55.1 74 54.1
Prupe.5G132900 Prunus persica HOM05D008304 ORTHO05D004056 2.5e-06 55.1 70 54.3
DCAR_013006 Daucus carota HOM05D005953 ORTHO05D004056 3.3e-06 54.7 87 44.8
Prupe.3G137400 Prunus persica HOM05D005953 ORTHO05D004056 3.3e-06 54.7 82 47.6
Thecc.03G217700 Theobroma cacao HOM05D008304 ORTHO05D004056 3.3e-06 54.7 79 49.4
MD09G1247900 Malus domestica HOM05D005953 ORTHO05D004056 4.2e-06 54.3 81 48.1
TAR629G3464 Trochodendron aralioides HOM05D008304 ORTHO05D004056 4.2e-06 54.3 76 48.7
COL.COLO4_10829 Corchorus olitorius HOM05D008304 ORTHO05D004056 7.2e-06 53.5 80 51.2
Duzib205G1739 Durio zibethinus HOM05D008304 ORTHO05D004056 7.2e-06 53.5 76 52.6
HPP92_014633 Vanilla planifolia HOM05D005953 ORTHO05D004056 7.2e-06 53.5 75 49.3


User provided reference genes

Program Settings