Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 3.8e-112 408.3 225 100.0
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 3.9e-64 248.8 234 66.7
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 6.4e-59 231.5 236 65.3
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 7.1e-58 228.0 237 65.0
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 3.1e-53 212.6 226 64.2
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 9.6e-47 191.0 241 52.3
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 6.0e-41 171.8 237 53.2
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 1.1e-39 167.5 246 48.0
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.1e-39 167.5 236 54.2
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.9e-39 166.8 230 53.9
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 4.3e-39 165.6 228 53.1
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 7.4e-39 164.9 237 50.6
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 3.4e-36 156.0 261 47.5
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 3.4e-36 156.0 222 48.2
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 7.6e-36 154.8 225 52.9
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 3.8e-35 152.5 242 46.3
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 5.0e-35 152.1 261 46.4
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 8.4e-35 151.4 222 48.2
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 3.2e-34 149.4 255 43.5
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 3.2e-34 149.4 227 46.7
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 5.5e-34 148.7 240 45.8
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 1.6e-33 147.1 229 46.7
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.6e-33 147.1 230 46.1
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.1e-33 145.2 236 45.8
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.1e-33 145.2 236 45.8
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 7.9e-33 144.8 240 45.0
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.3e-32 144.1 228 48.2
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.3e-32 143.3 203 46.3
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.5e-31 140.6 263 43.7
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.5e-31 140.6 244 43.4
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 2.5e-31 139.8 250 45.6
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 3.3e-31 139.4 235 42.6
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 3.3e-31 139.4 253 42.3
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.3e-31 139.4 226 46.5
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 3.3e-31 139.4 231 43.7
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 4.3e-31 139.0 250 42.0
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 4.3e-31 139.0 221 41.2
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 4.3e-31 139.0 191 48.7
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 5.7e-31 138.7 236 44.5
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 5.7e-31 138.7 234 47.4
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.3e-30 137.5 224 42.4
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.6e-30 137.1 194 47.4
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 2.2e-30 136.7 237 48.1
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 2.8e-30 136.3 231 46.3
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.7e-30 136.0 223 46.6
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.7e-30 136.0 220 41.8
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 6.3e-30 135.2 237 41.4
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 1.4e-29 134.0 163 55.8
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-29 133.3 222 41.9
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-29 133.3 181 43.6
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.4e-29 133.3 222 41.9
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 4.1e-29 132.5 197 46.2
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 4.1e-29 132.5 251 42.2
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 5.3e-29 132.1 218 40.8
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 5.3e-29 132.1 81 75.3
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 1.2e-28 131.0 238 42.0
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.5e-28 130.6 242 43.4
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 2.0e-28 130.2 224 41.5
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 2.6e-28 129.8 222 41.0
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 2.6e-28 129.8 223 40.4
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 2.6e-28 129.8 264 43.2
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.4e-28 129.4 224 40.2
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 3.4e-28 129.4 236 41.1
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.5e-28 129.0 238 40.8
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 5.9e-28 128.6 231 44.2
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 2.2e-27 126.7 222 40.5
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 2.2e-27 126.7 224 40.2
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 2.9e-27 126.3 177 44.1
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 2.9e-27 126.3 177 44.1
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 2.9e-27 126.3 232 40.9
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 5.0e-27 125.6 256 41.8
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 5.0e-27 125.6 192 43.2
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 6.5e-27 125.2 272 40.8
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.1e-26 124.4 209 43.5
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 1.1e-26 124.4 225 44.4
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.4e-26 124.0 230 40.9
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 1.9e-26 123.6 177 44.1
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 1.9e-26 123.6 232 41.4
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 2.5e-26 123.2 223 39.0
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 3.2e-26 122.9 217 46.5
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 3.2e-26 122.9 250 41.6
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 3.2e-26 122.9 221 41.2
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 4.2e-26 122.5 194 42.8
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 5.5e-26 122.1 228 39.5
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.6e-25 120.6 225 42.7
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.1e-25 120.2 82 70.7
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 2.7e-25 119.8 224 42.4
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 2.7e-25 119.8 223 39.5
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.6e-25 119.0 220 41.8
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 6.1e-25 118.6 245 43.3
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.0e-24 117.9 224 39.7
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.0e-24 117.9 266 37.2
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.0e-24 117.9 222 39.2
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.8e-24 117.1 231 41.6
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.3e-24 116.7 219 38.4
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 2.3e-24 116.7 218 39.9
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 2.3e-24 116.7 218 39.9
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 2.3e-24 116.7 97 59.8
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.9e-24 115.9 223 39.9
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 5.1e-24 115.5 93 59.1
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 6.7e-24 115.2 141 52.5
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.7e-24 115.2 242 43.4
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.1e-23 114.4 237 40.1
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.1e-23 114.4 233 40.3
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.5e-23 114.0 237 40.5
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 2.0e-23 113.6 155 46.5
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 2.0e-23 113.6 228 39.5
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.0e-23 113.6 226 37.2
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 2.5e-23 113.2 245 43.3
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 3.3e-23 112.8 82 63.4
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 3.3e-23 112.8 108 57.4
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.7e-23 112.1 235 40.9
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 5.7e-23 112.1 82 63.4
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 7.4e-23 111.7 78 64.1
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 7.4e-23 111.7 223 38.6
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 9.7e-23 111.3 178 42.7
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.3e-22 110.9 245 39.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.7e-22 110.5 156 41.7
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 2.2e-22 110.2 253 37.9
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 2.8e-22 109.8 76 67.1
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 3.7e-22 109.4 108 54.6
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 4.8e-22 109.0 84 59.5
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.1e-21 107.8 181 37.6
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.1e-21 107.8 181 37.6
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.8e-21 107.1 236 37.3
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 3.1e-21 106.3 222 42.3
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 9.1e-21 104.8 177 40.1
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 9.1e-21 104.8 182 40.7
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 9.1e-21 104.8 228 42.1
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.2e-20 104.4 219 41.6
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 2.6e-20 103.2 226 33.6
TPR.G1736 Trifolium pratense HOM05D004801 ORTHO05D005747 5.9e-20 102.1 111 64.9
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 2.9e-19 99.8 240 39.6
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 3.8e-19 99.4 78 57.7
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 5.0e-19 99.0 176 35.8
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 7.4e-15 85.1 205 31.2
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 2.2e-14 83.6 119 50.4
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.8e-14 83.2 77 53.2
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 8.2e-14 81.6 213 31.5
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 5.9e-12 75.5 182 33.0
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.0e-11 74.7 188 34.6
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 5.2e-08 62.4 155 34.2


User provided reference genes

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