Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01462_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 1.3e-197 693.0 366 100.0
Medtr2g091180 Medicago truncatula HOM05D004563 ORTHO05D002944 8.5e-93 344.7 367 55.6
Glyma.13G291600 Glycine max HOM05D004563 ORTHO05D002944 2.4e-87 326.6 414 47.8
Glyma.12G209700 Glycine max HOM05D004563 ORTHO05D002944 2.2e-85 320.1 412 47.3
TPR.G29469 Trifolium pratense HOM05D004563 ORTHO05D002944 4.7e-67 259.2 323 51.7
Lalb_Chr03g0029881 Lupinus albus HOM05D004563 ORTHO05D002944 4.4e-65 252.7 414 39.6
Ca_14758_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 3.1e-63 246.5 148 87.2
Lj3g0023253 Lotus japonicus HOM05D004563 ORTHO05D002944 3.5e-62 243.0 412 42.5
arahy.Tifrunner.gnm1.ann1.65XND6 Arachis hypogaea HOM05D004563 ORTHO05D002944 5.9e-62 242.3 400 40.0
arahy.Tifrunner.gnm1.ann1.P6YWRU Arachis hypogaea HOM05D004563 ORTHO05D002944 5.9e-62 242.3 400 40.2
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 3.8e-61 239.6 394 42.1
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 1.1e-60 238.0 406 40.4
Lj3g0000357 Lotus japonicus HOM05D004563 ORTHO05D002944 9.5e-60 235.0 410 39.5
Lalb_Chr14g0367401 Lupinus albus HOM05D004563 ORTHO05D002944 6.8e-58 228.8 392 42.3
Ca_18892_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 4.9e-56 222.6 417 40.5
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 1.0e-53 214.9 386 40.4
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 6.1e-51 205.7 403 37.5
Glyma.18G179200 Glycine max HOM05D004563 ORTHO05D002944 8.0e-51 205.3 425 37.4
Glyma.12G122400 Glycine max HOM05D004563 ORTHO05D002944 2.0e-49 200.7 411 37.0
arahy.Tifrunner.gnm1.ann1.47XKI7 Arachis hypogaea HOM05D004563 ORTHO05D002944 2.2e-48 197.2 405 36.3
VMungo1127G1865 Vigna mungo HOM05D004563 ORTHO05D002944 9.2e-47 191.8 404 37.1
Phvul.011G134500 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 3.5e-46 189.9 410 35.9
TPR.G30391 Trifolium pratense HOM05D004563 ORTHO05D002944 3.1e-34 150.2 393 32.8
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 4.9e-32 142.9 428 31.5
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 1.1e-28 131.7 441 29.3
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 5.6e-28 129.4 411 31.1
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 1.2e-27 128.3 386 31.3
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 2.0e-25 120.9 438 28.8
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 2.6e-25 120.6 431 27.4
Psat7g166160 Pisum sativum HOM05D004563 ORTHO05D002944 2.9e-24 117.1 363 31.7
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 3.8e-24 116.7 391 31.2
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 6.4e-24 115.9 437 27.5
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 2.7e-22 110.5 408 29.4
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 1.0e-21 108.6 406 29.3
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.3e-21 108.2 408 27.9
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 3.0e-21 107.1 431 28.3
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 3.9e-21 106.7 400 28.5
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 3.9e-21 106.7 419 28.9
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 5.1e-21 106.3 423 30.0
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 1.1e-20 105.1 399 29.1
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.1e-20 105.1 399 29.1
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 1.5e-20 104.8 436 28.9
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.5e-20 104.8 405 28.4
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 1.9e-20 104.4 408 30.6
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.9e-20 104.4 397 28.7
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 1.9e-20 104.4 431 28.1
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 2.5e-20 104.0 408 28.7
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 4.3e-20 103.2 437 27.9
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 1.6e-19 101.3 398 27.4
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 3.6e-19 100.1 417 26.9
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.1e-18 98.6 423 26.7
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 2.4e-18 97.4 419 28.9
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 3.1e-18 97.1 487 26.1
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 5.2e-18 96.3 407 27.8
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 8.9e-18 95.5 423 26.5
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.5e-17 94.7 411 28.7
Potri.019G089900 Populus trichocarpa HOM05D004563 ORTHO05D002944 2.0e-17 94.4 418 28.5
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 4.4e-17 93.2 391 29.2
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 5.8e-17 92.8 404 27.2
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 5.8e-17 92.8 393 27.2
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 9.9e-17 92.0 119 42.9
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 9.9e-17 92.0 421 27.8
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 2.2e-16 90.9 430 27.0
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.9e-16 90.5 415 26.0
Potri.013G118000 Populus trichocarpa HOM05D004563 ORTHO05D002944 2.9e-16 90.5 427 27.4
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 3.8e-16 90.1 374 26.5
Psat5g276160 Pisum sativum HOM05D004563 ORTHO05D002944 8.4e-16 89.0 198 41.4
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 3.2e-15 87.0 410 25.1
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 3.2e-15 87.0 430 28.1
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 5.4e-15 86.3 403 24.6
Sabra13G0099900 Salix brachista HOM05D004563 ORTHO05D002944 1.2e-14 85.1 422 27.5
FAN05G5668 Fragaria x ananassa HOM05D004563 ORTHO05D002944 1.6e-14 84.7 364 27.7
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 2.1e-14 84.3 415 28.2
Medtr5g052190 Medicago truncatula HOM05D023930 ORTHO05D018030 2.1e-14 84.3 154 41.6
Nitab4.5_0000537g0100 Nicotiana tabacum HOM05D004563 ORTHO05D002944 2.1e-14 84.3 428 26.6
Rhsim06G0133100 Rhododendron simsii HOM05D004563 ORTHO05D002944 2.1e-14 84.3 127 40.2
Peaxi162Scf00384g00511 Petunia axillaris HOM05D004563 ORTHO05D002944 2.7e-14 84.0 415 28.2
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 2.7e-14 84.0 112 42.9
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.0e-13 82.0 127 41.7
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 3.0e-13 80.5 434 28.3
Lalb_Chr19g0134931 Lupinus albus HOM05D004563 ORTHO05D002944 3.9e-13 80.1 65 56.9
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 1.5e-12 78.2 67 53.7
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 1.5e-12 78.2 86 45.3
Migut.M00253 Erythranthe guttata HOM05D004563 ORTHO05D002944 3.3e-12 77.0 61 55.7
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 3.3e-12 77.0 415 26.7
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 5.6e-12 76.3 80 46.2
Aa31LG5G5790 Aethionema arabicum HOM05D004563 ORTHO05D002944 7.3e-12 75.9 62 53.2
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 7.3e-12 75.9 345 27.2
CSS0015057 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 1.3e-11 75.1 107 37.4
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 1.3e-11 75.1 416 26.0
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 1.3e-11 75.1 427 26.5
RcHm_v2.0_Chr2g0128481 Rosa chinensis HOM05D004563 ORTHO05D002944 1.6e-11 74.7 180 31.1
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 2.8e-11 73.9 106 41.5
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 6.2e-11 72.8 394 25.9
EL10Ac9g20912 Beta vulgaris HOM05D004563 ORTHO05D002944 1.1e-10 72.0 402 26.6
Cpa.g.sc209.31 Carica papaya HOM05D004563 ORTHO05D002944 1.1e-10 72.0 404 27.0
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 2.4e-10 70.9 58 53.4
SalBow7G0936 Salvia bowleyana HOM05D004563 ORTHO05D002944 6.9e-10 69.3 61 49.2
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 9.0e-10 68.9 380 27.1
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 1.2e-09 68.6 97 39.2
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.5e-09 68.2 63 47.6
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 2.0e-09 67.8 59 49.2
BcaC01g05977 Brassica carinata HOM05D004563 ORTHO05D002944 2.0e-09 67.8 174 28.7
Lalb_Chr19g0134941 Lupinus albus HOM05D004563 ORTHO05D002944 3.4e-09 67.0 144 39.6
C03p20530 Brassica napus HOM05D004563 ORTHO05D002944 7.6e-09 65.9 173 28.3
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 7.6e-09 65.9 402 25.9
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 7.6e-09 65.9 402 25.9
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 7.6e-09 65.9 63 46.0
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 9.9e-09 65.5 401 25.7
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 9.9e-09 65.5 162 28.4
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 9.9e-09 65.5 63 47.6
A03p17400 Brassica napus HOM05D004563 ORTHO05D002944 1.3e-08 65.1 190 26.8
BolC3t14433H Brassica oleracea HOM05D004563 ORTHO05D002944 1.3e-08 65.1 173 28.9
BraA03t11011Z Brassica rapa HOM05D004563 ORTHO05D002944 1.3e-08 65.1 190 26.8
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 1.3e-08 65.1 94 41.5
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.3e-08 65.1 367 23.7
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 1.7e-08 64.7 68 47.1
Sabra19G0103600 Salix brachista HOM05D004563 ORTHO05D002944 1.7e-08 64.7 232 28.4
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 2.2e-08 64.3 358 27.1
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 2.2e-08 64.3 197 27.4
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 2.9e-08 63.9 431 23.7
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 2.9e-08 63.9 411 25.1
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 2.9e-08 63.9 390 24.1
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 2.9e-08 63.9 90 40.0
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 3.8e-08 63.5 313 26.2
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 3.8e-08 63.5 160 28.8
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 4.9e-08 63.2 61 49.2
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 4.9e-08 63.2 68 44.1
AUR62038920 Chenopodium quinoa HOM05D004563 ORTHO05D002944 8.4e-08 62.4 409 25.4
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 8.4e-08 62.4 185 29.7
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 8.4e-08 62.4 102 39.2
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 8.4e-08 62.4 61 42.6
SGA_v2.0_scaffold9G04806 Striga asiatica HOM05D004563 ORTHO05D002944 8.4e-08 62.4 398 24.9
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.1e-07 62.0 165 30.9
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 1.1e-07 62.0 88 42.0
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.1e-07 62.0 88 42.0
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 1.1e-07 62.0 367 22.9
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.1e-07 62.0 55 49.1
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 1.4e-07 61.6 431 24.4
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 1.4e-07 61.6 104 35.6
unitig_747.g21618 Utricularia gibba HOM05D004563 ORTHO05D002944 1.4e-07 61.6 417 23.5
COL.COLO4_17605 Corchorus olitorius HOM05D008023 ORTHO05D002944 1.9e-07 61.2 59 47.5
Nn1g09097 Nelumbo nucifera HOM05D004563 ORTHO05D002944 1.9e-07 61.2 64 43.8
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 1.9e-07 61.2 62 41.9
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 1.9e-07 61.2 66 47.0
CSS0018366 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 2.4e-07 60.8 147 32.0
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 2.4e-07 60.8 135 31.1
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 2.4e-07 60.8 245 23.3
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 2.4e-07 60.8 88 40.9
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 3.2e-07 60.5 62 41.9
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 3.2e-07 60.5 55 49.1
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 4.2e-07 60.1 143 30.8
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.2e-07 60.1 365 24.7
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 4.2e-07 60.1 404 26.5
MSTRG.14955 Avicennia marina HOM05D008023 ORTHO05D002944 5.4e-07 59.7 63 42.9
BcaB06g28496 Brassica carinata HOM05D004563 ORTHO05D002944 5.4e-07 59.7 387 24.5
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 5.4e-07 59.7 61 44.3
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 5.4e-07 59.7 88 40.9
ATR0602G009 Amborella trichopoda HOM05D004563 ORTHO05D002944 7.1e-07 59.3 62 45.2
CSS0011468 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 7.1e-07 59.3 436 24.5
DCAR_013061 Daucus carota HOM05D004563 ORTHO05D002944 7.1e-07 59.3 378 22.2
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 7.1e-07 59.3 55 45.5
Sc21g0003700 Simmondsia chinensis HOM05D004563 ORTHO05D002944 7.1e-07 59.3 445 24.7
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 9.3e-07 58.9 394 25.6
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 9.3e-07 58.9 55 45.5
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.2e-06 58.5 50 52.0
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 1.2e-06 58.5 50 52.0
BcaB06g28418 Brassica carinata HOM05D004563 ORTHO05D002944 1.6e-06 58.2 378 25.9
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.6e-06 58.2 181 28.2
CAN.G456.28 Capsicum annuum HOM05D004563 ORTHO05D002944 1.6e-06 58.2 399 25.3
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 1.6e-06 58.2 64 40.6
vmacro09223 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 1.6e-06 58.2 402 25.6
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 2.1e-06 57.8 62 41.9
Lsat_1_v5_gn_9_99560 Lactuca sativa HOM05D029722 ORTHO05D002944 2.1e-06 57.8 370 24.3
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 2.7e-06 57.4 437 24.3
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 2.7e-06 57.4 381 24.9
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 3.5e-06 57.0 55 45.5
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 6.0e-06 56.2 61 41.0
MBI06_g25989_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 7.9e-06 55.8 67 38.8


User provided reference genes

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