Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.5e-169 599.4 296 100.0
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.9e-153 544.3 290 93.4
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 4.2e-143 511.5 290 86.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 9.8e-140 500.4 292 84.6
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 4.8e-139 498.0 290 84.5
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 9.1e-138 493.8 291 84.9
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 6.5e-136 487.6 294 83.0
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 8.0e-126 454.1 296 77.0
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 1.9e-119 433.0 295 74.9
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 2.3e-109 399.4 288 70.1
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 6.6e-104 381.3 295 66.1
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 2.3e-101 372.9 295 65.8
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.6e-100 369.4 307 64.2
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 2.4e-98 362.8 295 61.7
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.6e-97 360.1 298 62.4
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.6e-97 360.1 298 62.4
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.1e-97 359.8 298 62.4
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.7e-97 359.4 298 62.4
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 7.8e-97 357.8 298 62.1
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 2.3e-96 356.3 295 64.4
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 2.3e-96 356.3 295 64.4
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.6e-96 354.8 298 61.7
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 1.5e-95 353.6 311 61.1
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.9e-95 353.2 296 63.5
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 3.3e-95 352.4 301 59.8
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 3.3e-95 352.4 313 60.4
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 4.3e-95 352.1 294 61.2
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.6e-95 351.7 299 61.5
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 4.7e-94 348.6 295 61.0
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 8.1e-94 347.8 293 61.1
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.1e-93 347.4 295 61.4
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.5e-92 343.6 297 63.3
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 4.4e-92 342.0 301 59.5
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.4e-92 342.0 295 61.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 5.8e-92 341.7 296 62.5
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 5.8e-92 341.7 300 60.7
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 2.2e-91 339.7 296 61.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 2.2e-91 339.7 291 60.1
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 3.8e-91 339.0 291 61.2
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.4e-90 337.0 289 59.2
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 9.3e-90 334.3 295 60.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.6e-89 333.6 296 56.8
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 7.8e-89 331.3 289 58.8
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.0e-88 330.9 296 59.1
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.3e-88 330.5 307 56.7
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 2.3e-88 329.7 296 59.5
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.9e-88 328.9 301 59.1
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 3.9e-88 328.9 289 58.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.9e-87 326.6 300 55.0
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.5e-87 326.2 294 58.5
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 3.6e-86 322.4 261 63.6
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 3.6e-86 322.4 297 58.9
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 6.2e-86 321.6 296 55.4
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 6.2e-86 321.6 295 57.3
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.1e-85 320.9 286 60.5
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 4.0e-85 318.9 303 57.1
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 5.3e-85 318.5 301 53.5
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.6e-84 316.2 328 54.6
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.2e-83 313.2 294 56.5
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 2.9e-83 312.8 303 54.1
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.1e-82 310.8 264 59.1
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 7.1e-82 308.1 278 59.4
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 7.1e-82 308.1 288 54.5
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.6e-81 307.0 282 55.0
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.7e-81 306.2 304 54.6
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.0e-81 305.1 328 53.7
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.8e-80 303.5 289 54.3
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 2.3e-80 303.1 312 54.2
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.0e-80 302.8 296 57.4
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 3.0e-80 302.8 296 55.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 6.7e-80 301.6 297 55.2
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.1e-79 300.8 291 55.3
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.1e-79 300.8 294 53.7
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 7.4e-79 298.1 296 52.4
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.3e-78 297.4 277 55.2
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.1e-78 296.6 288 55.9
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.8e-78 296.2 230 67.0
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.8e-78 296.2 230 67.0
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.6e-78 295.8 284 55.3
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 8.1e-78 294.7 293 54.6
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.4e-77 293.9 244 59.8
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 5.3e-77 292.0 240 63.8
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 6.9e-77 291.6 291 55.3
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 1.5e-76 290.4 297 53.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.5e-76 290.4 297 53.2
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.5e-76 290.4 297 53.2
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.5e-76 290.4 289 55.7
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.6e-76 289.7 295 55.3
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 7.6e-76 288.1 301 54.2
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 7.6e-76 288.1 212 66.5
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 3.8e-75 285.8 294 55.4
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 3.8e-75 285.8 290 54.1
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 3.2e-74 282.7 222 59.9
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 7.9e-73 278.1 300 51.3
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 7.9e-73 278.1 250 60.8
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.6e-71 271.2 295 51.2
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 5.8e-68 261.9 307 48.9
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 8.4e-67 258.1 279 49.8
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 5.5e-66 255.4 306 47.7
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 6.0e-65 251.9 231 53.7
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.0e-64 251.1 273 51.3
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.3e-64 250.8 300 49.3
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 2.3e-64 250.0 250 54.8
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 3.0e-64 249.6 272 48.2
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 8.7e-64 248.1 311 49.2
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 3.3e-63 246.1 300 49.3
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 7.4e-63 245.0 300 48.7
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-60 237.3 269 48.3
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.1e-58 231.1 233 54.9
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.2e-58 229.6 249 52.2
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.8e-56 223.8 170 61.2
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 4.3e-55 219.2 278 42.4
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 2.8e-54 216.5 226 49.1
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.3e-51 207.6 215 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 2.2e-51 206.8 248 44.8
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.0e-51 205.7 193 58.5
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.8e-48 197.2 178 58.4
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 6.7e-48 195.3 212 50.5
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.7e-47 192.2 200 49.0
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 6.9e-45 185.3 142 64.1
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 7.7e-44 181.8 240 47.1
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.0e-43 181.4 123 68.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.5e-43 178.3 268 38.4
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.0e-40 171.4 144 57.6
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.0e-40 171.4 183 52.5
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 6.7e-40 168.7 140 59.3
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 3.3e-39 166.4 237 43.0
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.3e-39 166.4 131 61.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.4e-37 160.2 158 55.7
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 5.9e-36 155.6 145 54.5
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 8.0e-33 145.2 209 41.1
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 4.0e-32 142.9 118 56.8
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 7.5e-31 138.7 149 45.6
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 2.8e-30 136.7 156 46.8
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 9.1e-29 131.7 218 41.3
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.3e-27 127.9 150 52.0
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 1.9e-26 124.0 59 96.6
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 9.4e-26 121.7 87 66.7
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.8e-24 117.5 258 31.8
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 2.8e-22 110.2 70 70.0
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.6e-20 104.4 195 32.3
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 3.5e-20 103.2 185 33.5
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 4.1e-13 79.7 65 61.5
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 8.3e-06 55.5 29 79.3


User provided reference genes

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