Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 1.3e-67 259.6 133 100.0
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 1.4e-50 203.0 139 77.7
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 7.9e-49 197.2 134 75.4
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 2.4e-45 185.7 137 73.0
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 7.2e-42 174.1 130 68.5
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 2.1e-41 172.6 137 67.9
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 2.0e-36 156.0 125 66.4
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 7.7e-36 154.1 120 66.7
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 1.7e-35 152.9 130 66.2
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.1e-34 150.2 127 61.4
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 8.0e-33 144.1 132 58.3
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.0e-33 144.1 140 57.9
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.8e-32 142.9 123 60.2
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 3.0e-32 142.1 140 57.9
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.0e-32 142.1 140 57.1
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 3.0e-32 142.1 127 57.5
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 4.0e-32 141.7 140 57.1
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 4.0e-32 141.7 140 57.1
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 1.5e-31 139.8 129 58.1
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 2.0e-31 139.4 140 56.4
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.4e-31 138.7 129 58.1
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 5.7e-31 137.9 129 58.9
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 2.2e-30 136.0 134 54.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 4.8e-30 134.8 128 55.5
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.4e-29 133.3 131 56.5
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 1.8e-29 132.9 130 56.9
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 5.3e-29 131.3 130 56.9
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 5.3e-29 131.3 135 54.8
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 7.7e-28 127.5 127 54.3
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 3.8e-27 125.2 120 57.5
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 8.5e-27 124.0 130 57.7
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 8.5e-27 124.0 130 51.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.1e-26 123.6 138 51.4
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 1.1e-26 123.6 124 55.6
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.5e-26 123.2 130 53.8
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 2.5e-26 122.5 134 53.7
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.5e-26 122.5 127 55.9
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 4.2e-26 121.7 140 52.9
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 4.2e-26 121.7 133 54.9
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.5e-26 121.3 135 53.3
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 7.2e-26 120.9 127 51.2
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 7.2e-26 120.9 130 52.3
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.2e-26 120.9 130 52.3
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 7.2e-26 120.9 125 50.4
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 9.4e-26 120.6 111 65.8
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 1.2e-25 120.2 124 51.6
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.6e-25 119.8 125 55.2
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.1e-25 119.4 124 53.2
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 2.1e-25 119.4 132 50.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 2.1e-25 119.4 126 54.0
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.7e-25 119.0 141 52.5
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 4.7e-25 118.2 138 50.0
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.0e-24 117.1 125 51.2
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.0e-24 117.1 125 51.2
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.4e-24 116.7 127 45.7
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.4e-24 116.7 140 49.3
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 1.8e-24 116.3 134 50.0
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.2e-24 114.8 141 50.4
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 6.8e-24 114.4 132 45.5
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 8.8e-24 114.0 141 50.4
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 4.4e-23 111.7 128 53.9
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 7.5e-23 110.9 118 46.6
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 1.3e-22 110.2 132 46.2
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.7e-22 109.8 135 50.4
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.8e-22 109.0 138 53.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.8e-21 106.3 141 45.4
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 2.4e-21 105.9 125 48.8
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 3.1e-21 105.5 153 45.1
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 5.4e-21 104.8 130 45.4
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 9.1e-21 104.0 124 47.6
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.2e-20 103.6 146 45.9
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.0e-20 102.8 132 42.4
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.7e-20 102.4 124 46.0
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.5e-20 102.1 138 50.7
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 3.5e-20 102.1 131 45.0
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 4.5e-20 101.7 102 53.9
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 4.5e-20 101.7 135 44.4
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 5.9e-20 101.3 123 45.5
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 7.7e-20 100.9 126 50.0
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 1.0e-19 100.5 130 43.8
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.7e-19 99.8 123 44.7
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.7e-19 99.8 105 46.7
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 5.0e-19 98.2 140 45.7
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 6.6e-19 97.8 135 42.2
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 1.1e-18 97.1 109 45.9
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 1.5e-18 96.7 107 47.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 2.5e-18 95.9 127 44.9
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 5.5e-18 94.7 112 49.1
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.2e-17 93.6 112 50.9
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.6e-17 93.2 122 45.9
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.6e-17 93.2 139 40.3
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 2.1e-17 92.8 107 43.9
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 2.1e-17 92.8 107 43.9
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.1e-17 92.8 99 53.5
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.6e-17 92.0 94 52.1
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 6.1e-17 91.3 107 44.9
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 8.0e-17 90.9 109 47.7
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 1.4e-16 90.1 107 43.0
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.8e-16 89.7 102 47.1
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.8e-16 89.7 139 39.6
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.3e-16 89.4 107 43.9
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.3e-16 89.4 107 43.9
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 2.3e-16 89.4 128 39.8
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 5.2e-16 88.2 124 39.5
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 6.8e-16 87.8 129 41.1
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 8.9e-16 87.4 107 43.9
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 8.9e-16 87.4 107 42.1
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 8.9e-16 87.4 112 41.1
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.2e-15 87.0 107 43.9
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.2e-15 87.0 107 43.0
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.2e-15 87.0 107 43.0
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.2e-15 87.0 107 43.0
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.6e-15 85.9 112 46.4
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.7e-14 83.2 120 44.2
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 2.2e-14 82.8 133 41.4
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.3e-14 81.3 149 39.6
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 9.2e-13 77.4 115 40.9
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.2e-13 77.4 115 40.9
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.2e-12 77.0 115 40.9
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.6e-12 76.6 140 36.4
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 6.6e-11 71.2 130 37.7
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 6.6e-11 71.2 130 37.7
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.1e-10 70.5 102 40.2
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.5e-10 70.1 80 47.5
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 1.9e-10 69.7 127 35.4
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 1.9e-10 69.7 134 38.1
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 2.1e-09 66.2 138 34.8
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 2.8e-09 65.9 129 33.3
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 3.6e-09 65.5 104 47.1
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 8.0e-09 64.3 123 39.8
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.0e-08 63.9 135 34.8
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 1.0e-08 63.9 139 31.7
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 1.4e-08 63.5 128 33.6
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 1.4e-08 63.5 144 30.6
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 6.8e-08 61.2 106 37.7
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.2e-07 60.5 114 34.2
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 1.3e-06 57.0 129 34.1
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 1.7e-06 56.6 135 32.6
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 6.4e-06 54.7 129 33.3
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 6.4e-06 54.7 111 35.1


User provided reference genes

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