Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01392_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 3.1e-226 788.1 389 100.0
Phvul.005G132400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 2.4e-202 708.8 385 90.9
Glyma.20G052000 Glycine max HOM05D004460 ORTHO05D005254 1.5e-201 706.1 385 91.4
VMungo1080G0188 Vigna mungo HOM05D004460 ORTHO05D005254 3.4e-201 704.9 385 90.6
Lj3g0001995 Lotus japonicus HOM05D004460 ORTHO05D005254 1.1e-194 683.3 384 88.8
TPR.G11585 Trifolium pratense HOM05D004460 ORTHO05D005254 1.1e-194 683.3 362 93.4
Medtr2g095220 Medicago truncatula HOM05D004460 ORTHO05D005254 3.4e-193 678.3 363 92.6
Cfa020869 Carpinus fangiana HOM05D004460 ORTHO05D005254 1.3e-192 676.4 386 86.5
arahy.Tifrunner.gnm1.ann1.NXCQ1Z Arachis hypogaea HOM05D004460 ORTHO05D005254 6.5e-192 674.1 389 85.1
Lalb_Chr14g0374551 Lupinus albus HOM05D004460 ORTHO05D005254 8.5e-192 673.7 388 85.6
arahy.Tifrunner.gnm1.ann1.B5CH19 Arachis hypogaea HOM05D004460 ORTHO05D005254 4.2e-191 671.4 389 84.8
Ciclev10001076m.g Citrus clementina HOM05D004460 ORTHO05D005254 2.1e-190 669.1 386 85.2
arahy.Tifrunner.gnm1.ann1.N29Z6M Arachis hypogaea HOM05D004460 ORTHO05D005254 7.9e-190 667.2 389 84.1
Prupe.6G004900 Prunus persica HOM05D004460 ORTHO05D005254 3.0e-189 665.2 388 84.5
Potri.016G130000 Populus trichocarpa HOM05D004460 ORTHO05D005254 2.5e-188 662.1 388 83.2
Haze_19298 Corylus avellana HOM05D004460 ORTHO05D005254 5.7e-188 661.0 386 85.5
TAR624G1319 Trochodendron aralioides HOM05D004460 ORTHO05D005254 7.4e-188 660.6 386 84.2
Atru.chr3.3576 Acer truncatum HOM05D004460 ORTHO05D005254 1.3e-187 659.8 386 84.2
MD11G1006700 Malus domestica HOM05D004460 ORTHO05D005254 6.3e-187 657.5 383 84.3
MD11G1007700 Malus domestica HOM05D004460 ORTHO05D005254 6.3e-187 657.5 383 84.3
CANSAT11G2169 Cannabis sativa HOM05D004460 ORTHO05D005254 1.4e-186 656.4 380 85.5
Glyma.13G182200 Glycine max HOM05D004460 ORTHO05D005254 1.8e-186 656.0 387 83.7
Manes.04G016600 Manihot esculenta HOM05D004460 ORTHO05D005254 3.1e-186 655.2 378 85.7
RcHm_v2.0_Chr5g0083231 Rosa chinensis HOM05D004460 ORTHO05D005254 6.9e-186 654.1 385 84.2
Ca_25732_v3 Cicer arietinum L. HOM05D004460 ORTHO05D005254 1.2e-185 653.3 381 84.8
Nn1g07453 Nelumbo nucifera HOM05D004460 ORTHO05D005254 1.2e-185 653.3 378 84.9
Thecc.09G346400 Theobroma cacao HOM05D004460 ORTHO05D005254 2.0e-185 652.5 385 84.9
TPR.G11973 Trifolium pratense HOM05D004460 ORTHO05D005254 7.7e-185 650.6 380 85.0
Actinidia37745 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.3e-184 649.8 379 85.2
PSO675G8453 Papaver somniferum HOM05D004460 ORTHO05D005254 2.2e-184 649.0 381 82.9
CSS0019934 Camellia sinensis var. sinensis HOM05D004460 ORTHO05D005254 2.9e-184 648.7 377 85.1
CANSAT11G0913 Cannabis sativa HOM05D004460 ORTHO05D005254 2.9e-184 648.7 380 84.7
Duzib150G0635 Durio zibethinus HOM05D004460 ORTHO05D005254 3.8e-184 648.3 384 84.6
GSVIVG01024777001 Vitis vinifera HOM05D004460 ORTHO05D005254 8.5e-184 647.1 382 84.0
QL02p091680 Quercus lobata HOM05D004460 ORTHO05D005254 1.4e-183 646.4 388 82.7
Actinidia03999 Actinidia chinensis HOM05D004460 ORTHO05D005254 1.9e-183 646.0 379 84.7
CsaV3_1G042370 Cucumis sativus L. HOM05D004460 ORTHO05D005254 2.5e-183 645.6 381 83.5
CiPaw.16G116700 Carya illinoinensis HOM05D004460 ORTHO05D005254 5.5e-183 644.4 381 84.0
QL02p091623 Quercus lobata HOM05D004460 ORTHO05D005254 5.5e-183 644.4 388 83.0
HanXRQChr01g0023931 Helianthus annuus HOM05D004460 ORTHO05D005254 2.1e-182 642.5 373 84.5
TWI79G0138 Tripterygium wilfordii HOM05D004460 ORTHO05D005254 2.1e-182 642.5 383 82.5
Lj1A198T34 Lonicera japonica HOM05D004460 ORTHO05D005254 2.7e-182 642.1 374 84.8
Sc04g0002220 Simmondsia chinensis HOM05D004460 ORTHO05D005254 2.7e-182 642.1 387 82.2
MSTRG.19754 Avicennia marina HOM05D004460 ORTHO05D005254 4.7e-182 641.3 383 83.6
Aqoxy3G02716 Aquilegia oxysepala HOM05D004460 ORTHO05D005254 7.9e-182 640.6 383 82.5
Medtr4g089065 Medicago truncatula HOM05D004460 ORTHO05D005254 7.9e-182 640.6 386 83.7
ClCG03G013680 Citrullus lanatus HOM05D004460 ORTHO05D005254 1.0e-181 640.2 381 82.9
Hund03380 Selenicereus undatus HOM05D004460 ORTHO05D005254 1.0e-181 640.2 384 83.3
Gohir.A03G031600 Gossypium hirsutum HOM05D004460 ORTHO05D005254 1.4e-181 639.8 386 83.2
Gohir.D03G136700 Gossypium hirsutum HOM05D004460 ORTHO05D005254 2.3e-181 639.0 386 83.4
Gorai.003G143800 Gossypium raimondii HOM05D004460 ORTHO05D005254 2.3e-181 639.0 386 83.4
SGA_v2.0_scaffold66G22336 Striga asiatica HOM05D004460 ORTHO05D005254 6.7e-181 637.5 383 82.5
Aa31sc412G40 Aethionema arabicum HOM05D004460 ORTHO05D005254 1.1e-180 636.7 385 81.3
Cpa.g.sc65.21 Carica papaya HOM05D004460 ORTHO05D005254 1.5e-180 636.3 386 81.3
Eucgr.J00902 Eucalyptus grandis HOM05D004460 ORTHO05D005254 1.5e-180 636.3 375 81.6
THA.LOC104799510 Tarenaya hassleriana HOM05D004460 ORTHO05D005254 2.6e-180 635.6 378 82.5
BcaC06g31990 Brassica carinata HOM05D004460 ORTHO05D005254 3.3e-180 635.2 377 82.5
unitig_899.g14459 Utricularia gibba HOM05D004460 ORTHO05D005254 3.3e-180 635.2 379 83.4
Solyc08g082840.3 Solanum lycopersicum HOM05D004460 ORTHO05D005254 5.7e-180 634.4 382 82.2
vmacro21498 Vaccinium macrocarpon HOM05D004460 ORTHO05D005254 5.7e-180 634.4 387 82.9
Sopen08g031070 Solanum pennellii HOM05D004460 ORTHO05D005254 7.4e-180 634.0 382 82.2
Sed0018938 Sechium edule HOM05D004460 ORTHO05D005254 9.7e-180 633.6 381 81.9
Thhalv10002532m.g Eutrema salsugineum HOM05D004460 ORTHO05D005254 1.3e-179 633.3 378 83.1
Migut.J01586 Erythranthe guttata HOM05D004460 ORTHO05D005254 1.7e-179 632.9 385 81.6
FvH4_3g45430 Fragaria vesca HOM05D004460 ORTHO05D005254 1.7e-179 632.9 421 76.7
Dinv32698 Davidia involucrata HOM05D004460 ORTHO05D005254 2.2e-179 632.5 362 87.0
Carub.0005s1090 Capsella rubella HOM05D004460 ORTHO05D005254 4.8e-179 631.3 383 82.0
ECA248G3543 Erigeron canadensis HOM05D004460 ORTHO05D005254 1.4e-178 629.8 372 83.1
AL5G23600 Arabidopsis lyrata HOM05D004460 ORTHO05D005254 1.8e-178 629.4 385 81.3
AT3G45100 Arabidopsis thaliana HOM05D004460 ORTHO05D005254 4.1e-178 628.2 385 81.0
FvH4_6g19460 Fragaria vesca HOM05D004460 ORTHO05D005254 5.9e-177 624.4 402 78.4
ATR0315G079 Amborella trichopoda HOM05D004460 ORTHO05D005254 1.7e-176 622.9 372 83.3
Lalb_Chr16g0383601 Lupinus albus HOM05D004460 ORTHO05D005254 3.8e-176 621.7 384 81.2
HPP92_024369 Vanilla planifolia HOM05D004460 ORTHO05D005254 1.1e-175 620.2 372 82.0
A10p33230 Brassica napus HOM05D004460 ORTHO05D005254 1.4e-175 619.8 372 82.5
BraA10t45351Z Brassica rapa HOM05D004460 ORTHO05D005254 1.4e-175 619.8 372 82.5
C09p74140 Brassica napus HOM05D004460 ORTHO05D005254 5.5e-175 617.8 372 82.0
BolC9t60146H Brassica oleracea HOM05D004460 ORTHO05D005254 5.5e-175 617.8 372 82.0
arahy.Tifrunner.gnm1.ann1.MW8ZKL Arachis hypogaea HOM05D004460 ORTHO05D005254 2.1e-174 615.9 372 82.5
CDE04G3212 Ceratophyllum demersum HOM05D004460 ORTHO05D005254 2.1e-174 615.9 382 78.8
arahy.Tifrunner.gnm1.ann1.HPBL6V Arachis hypogaea HOM05D004460 ORTHO05D005254 2.3e-173 612.5 372 81.7
EL10Ac2g03980 Beta vulgaris HOM05D004460 ORTHO05D005254 1.1e-172 610.1 389 79.4
Os07g0270950 Oryza sativa ssp. japonica HOM05D004460 ORTHO05D005254 8.2e-171 604.0 377 80.1
Zm00001eb097230 Zea mays HOM05D004460 ORTHO05D005254 1.4e-170 603.2 374 81.0
Zm00001eb322240 Zea mays HOM05D004460 ORTHO05D005254 2.0e-169 599.4 374 80.7
BcaNung02130 Brassica carinata HOM05D004460 ORTHO05D005254 3.8e-168 595.1 356 82.3
Peaxi162Scf00503g00426 Petunia axillaris HOM05D004460 ORTHO05D005254 1.1e-167 593.6 382 78.3
Lsat_1_v5_gn_1_77661 Lactuca sativa HOM05D004460 ORTHO05D005254 7.2e-167 590.9 375 78.9
arahy.Tifrunner.gnm1.ann1.QEP9US Arachis hypogaea HOM05D004460 ORTHO05D005254 2.1e-166 589.3 334 87.4
Hma1.2p1_2380F.1_g320963 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.1e-166 589.3 335 88.7
Nitab4.5_0002151g0070 Nicotiana tabacum HOM05D004460 ORTHO05D005254 3.6e-166 588.6 424 72.9
Phvul.002G226400 Phaseolus vulgaris HOM05D004460 ORTHO05D005254 4.7e-166 588.2 387 76.7
MBI01_g34901_MAGBIO Magnolia biondii HOM05D004460 ORTHO05D005254 1.8e-165 586.3 388 78.1
SHI20353 Sapria himalayana HOM05D004460 ORTHO05D005254 1.7e-163 579.7 361 79.2
Ah.10g034870 Amaranthus hybridus HOM05D004460 ORTHO05D005254 4.8e-163 578.2 375 78.7
DCAR_003960 Daucus carota HOM05D004460 ORTHO05D005254 2.0e-161 572.8 332 86.7
Rhsim03G0064700 Rhododendron simsii HOM05D004460 ORTHO05D005254 4.5e-161 571.6 400 74.2
Psat5g279520 Pisum sativum HOM05D004460 ORTHO05D005254 1.0e-160 570.5 302 94.4
Pp3c16_10880 Physcomitrium patens HOM05D004460 ORTHO05D005254 3.8e-160 568.5 377 75.3
AUR62009232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 4.4e-156 555.1 384 73.7
FAN16G0028 Fragaria x ananassa HOM05D004460 ORTHO05D005254 8.3e-155 550.8 385 72.7
FAN21G3501 Fragaria x ananassa HOM05D004460 ORTHO05D005254 8.3e-155 550.8 385 72.7
Oeu022026.1 Olea europaea HOM05D004460 ORTHO05D005254 1.0e-152 543.9 375 74.4
Mapoly0056s0054 Marchantia polymorpha HOM05D004460 ORTHO05D005254 5.0e-152 541.6 373 70.8
SMO353G0094 Selaginella moellendorffii HOM05D004460 ORTHO05D005254 8.6e-152 540.8 372 71.8
Atru.chr3.596 Acer truncatum HOM05D004460 ORTHO05D005254 2.3e-149 532.7 376 73.4
COL.COLO4_18287 Corchorus olitorius HOM05D004460 ORTHO05D005254 5.2e-149 531.6 316 85.1
Sp6g40060 Schrenkiella parvula HOM05D004460 ORTHO05D005254 6.8e-149 531.2 311 84.9
AUR62040232 Chenopodium quinoa HOM05D004460 ORTHO05D005254 3.7e-147 525.4 380 70.0
Nitab4.5_0004436g0010 Nicotiana tabacum HOM05D004460 ORTHO05D005254 6.3e-147 524.6 366 76.2
MELO3C015670.2 Cucumis melo HOM05D004460 ORTHO05D005254 5.4e-146 521.5 362 72.7
FAN11G0550 Fragaria x ananassa HOM05D004460 ORTHO05D005254 1.0e-144 517.3 450 62.2
Actinidia03889 Actinidia chinensis HOM05D004460 ORTHO05D005254 8.6e-144 514.2 379 69.4
PGSC0003DMG400012127 Solanum tuberosum HOM05D004460 ORTHO05D005254 2.1e-142 509.6 374 69.8
TAR626G0869 Trochodendron aralioides HOM05D004460 ORTHO05D005254 2.8e-142 509.2 315 80.6
CBR_g8747 Chara braunii HOM05D004460 ORTHO05D005254 1.1e-138 497.3 379 66.2
Cc01_g10730 Coffea canephora HOM05D004460 ORTHO05D005254 1.9e-130 469.9 263 90.9
arahy.Tifrunner.gnm1.ann1.RT1NLW Arachis hypogaea HOM05D004460 ORTHO05D005254 1.9e-122 443.4 273 83.5
Prupe.6G143200 Prunus persica HOM05D004460 ORTHO05D005254 6.6e-120 434.9 345 69.0
AagrBONN_evm.TU.Sc2ySwM_344.3907 Anthoceros agrestis HOM05D004460 ORTHO05D005254 1.4e-114 417.2 283 74.6
BolC2t06047H Brassica oleracea HOM05D004460 ORTHO05D005254 4.0e-109 399.1 293 70.6
Cre01.g006800 Chlamydomonas reinhardtii HOM05D004460 ORTHO05D005254 5.3e-109 398.7 387 53.7
Psat7g112240 Pisum sativum HOM05D004460 ORTHO05D005254 9.0e-109 397.9 238 85.7
MD03G1005200 Malus domestica HOM05D004460 ORTHO05D005254 5.8e-108 395.2 319 68.0
SEGI_40785 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 8.4e-107 391.3 250 78.8
CARHR150840 Cardamine hirsuta HOM05D004460 ORTHO05D005254 5.4e-106 388.7 230 84.3
MCO11G325 Micromonas commoda HOM05D004460 ORTHO05D005254 2.1e-102 376.7 411 50.4
Cfa022887 Carpinus fangiana HOM05D004460 ORTHO05D005254 4.9e-99 365.5 414 48.6
BcaB05g21890 Brassica carinata HOM05D004460 ORTHO05D005254 3.5e-97 359.4 276 68.5
Haze_27141 Corylus avellana HOM05D004460 ORTHO05D005254 7.6e-92 341.7 373 49.1
Hma1.2p1_1786F.1_g302290 Hydrangea macrophylla HOM05D004460 ORTHO05D005254 2.9e-91 339.7 199 84.9
Lj4A675G47 Lonicera japonica HOM05D004460 ORTHO05D005254 2.9e-91 339.7 226 77.0
arahy.Tifrunner.gnm1.ann1.TK1EDX Arachis hypogaea HOM05D004460 ORTHO05D005254 9.6e-87 324.7 215 79.1
PRCOL_00000052 Prasinoderma coloniale HOM05D004460 ORTHO05D005254 2.1e-86 323.6 409 44.0
arahy.Tifrunner.gnm1.ann1.X9KU0H Arachis hypogaea HOM05D004460 ORTHO05D005254 1.0e-83 314.7 214 75.7
Sabra16G0128800 Salix brachista HOM05D004460 ORTHO05D005254 1.7e-83 313.9 182 84.1
arahy.Tifrunner.gnm1.ann1.U8K6WM Arachis hypogaea HOM05D004460 ORTHO05D005254 4.6e-81 305.8 184 79.9
Peaxi162Scf00073g01829 Petunia axillaris HOM05D004460 ORTHO05D005254 4.6e-81 305.8 179 85.5
VMungo0251G0290 Vigna mungo HOM05D004460 ORTHO05D005254 6.7e-80 302.0 177 84.2
BraA02t04718Z Brassica rapa HOM05D004460 ORTHO05D005254 8.5e-75 285.0 211 69.7
FAN25G0085 Fragaria x ananassa HOM05D004460 ORTHO05D005254 5.1e-72 275.8 321 52.6
Lj4A665T31 Lonicera japonica HOM05D004460 ORTHO05D005254 1.1e-63 248.1 136 86.8
arahy.Tifrunner.gnm1.ann1.XS4KTC Arachis hypogaea HOM05D004460 ORTHO05D005254 3.3e-63 246.5 140 83.6
MSTRG.17732 Avicennia marina HOM05D004460 ORTHO05D005254 1.0e-59 235.0 136 80.1
Glyma.20G052400 Glycine max HOM05D004460 ORTHO05D005254 3.0e-56 223.4 122 86.9
VMungo0251G0332 Vigna mungo HOM05D004460 ORTHO05D005254 1.4e-48 198.0 162 65.4
BcaC03g13060 Brassica carinata HOM05D004460 ORTHO05D005254 2.6e-47 193.7 151 65.6
C02p00480 Brassica napus HOM05D004460 ORTHO05D005254 2.8e-46 190.3 149 65.8
HPP92_027906 Vanilla planifolia HOM05D004460 ORTHO05D005254 3.7e-46 189.9 224 52.7
Cc01_g10740 Coffea canephora HOM05D004460 ORTHO05D005254 2.3e-40 170.6 120 69.2
C02p00470 Brassica napus HOM05D004460 ORTHO05D005254 4.0e-32 143.3 177 49.2
Psat7g055560 Pisum sativum HOM05D004460 ORTHO05D005254 8.9e-32 142.1 138 57.2
Psat6g225840 Pisum sativum HOM05D004460 ORTHO05D005254 2.6e-31 140.6 91 74.7
Psat3g055640 Pisum sativum HOM05D004460 ORTHO05D005254 1.1e-29 135.2 78 79.5
CAN.G567.62 Capsicum annuum HOM05D004460 ORTHO05D005254 4.0e-24 116.7 96 62.5
SEGI_00213 Sequoiadendron giganteum HOM05D004460 ORTHO05D005254 1.3e-19 101.7 78 59.0
Carub.0004s0823 Capsella rubella HOM05D004460 ORTHO05D005254 5.0e-19 99.8 76 71.1
HPP92_024473 Vanilla planifolia HOM05D004460 ORTHO05D005254 2.6e-15 87.4 77 63.6
Medtr2g047140 Medicago truncatula HOM05D004460 ORTHO05D005254 1.3e-14 85.1 53 75.5
MD03G1005100 Malus domestica HOM05D004460 ORTHO05D005254 1.9e-13 81.3 44 79.5
FAN23G3015 Fragaria x ananassa HOM05D004460 ORTHO05D005254 2.3e-08 64.3 40 72.5
Actinidia05349 Actinidia chinensis HOM05D003378 ORTHO05D003942 2.9e-06 57.4 152 30.9
Nitab4.5_0004030g0030 Nicotiana tabacum HOM05D003378 ORTHO05D003942 3.7e-06 57.0 117 34.2
arahy.Tifrunner.gnm1.ann1.YIK7D0 Arachis hypogaea HOM05D003378 ORTHO05D003942 4.9e-06 56.6 174 28.2
Actinidia01107 Actinidia chinensis HOM05D003378 ORTHO05D003942 6.4e-06 56.2 152 32.2
arahy.Tifrunner.gnm1.ann1.L6AUEE Arachis hypogaea HOM05D003378 ORTHO05D003942 6.4e-06 56.2 174 28.2
unitig_27.g24826 Utricularia gibba HOM05D003378 ORTHO05D003942 6.4e-06 56.2 125 32.0


User provided reference genes

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