Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.2e-233 812.8 391 100.0
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.0e-197 693.3 366 91.3
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 2.6e-193 678.7 368 89.1
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 2.5e-191 672.2 367 88.3
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 3.2e-175 618.6 368 80.4
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 3.6e-174 615.1 368 79.6
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 3.0e-173 612.1 366 80.9
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 2.3e-168 595.9 367 78.5
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 1.2e-164 583.6 368 77.4
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 1.8e-157 559.7 330 80.6
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 2.0e-156 556.2 330 80.6
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.2e-145 520.4 368 68.8
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 6.6e-144 514.6 368 68.8
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 8.6e-144 514.2 371 67.9
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 3.3e-143 512.3 376 67.6
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 9.5e-143 510.8 362 66.9
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.7e-142 508.4 367 68.1
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 8.1e-142 507.7 331 71.9
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.8e-141 506.5 344 70.3
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 1.2e-140 503.8 335 73.1
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.5e-140 503.4 365 66.0
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 2.6e-140 502.7 376 65.4
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 2.6e-140 502.7 372 65.3
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 3.4e-140 502.3 373 66.0
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 4.4e-140 501.9 366 64.8
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 2.9e-139 499.2 338 69.5
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.9e-139 499.2 373 65.7
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-138 497.3 372 64.8
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 1.4e-138 496.9 370 65.1
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 1.9e-138 496.5 368 64.9
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 2.4e-138 496.1 358 66.8
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.4e-138 496.1 369 66.4
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 4.1e-138 495.4 345 69.9
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 5.4e-138 495.0 343 69.7
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 5.4e-138 495.0 343 70.0
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.2e-137 493.8 350 67.1
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.2e-137 493.8 347 68.3
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.6e-137 493.4 338 68.3
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 2.7e-137 492.7 333 70.0
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 1.0e-136 490.7 352 67.9
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 8.6e-136 487.6 353 66.9
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 8.6e-136 487.6 359 66.6
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 1.1e-135 487.3 338 68.0
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 1.1e-135 487.3 338 68.0
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 1.5e-135 486.9 338 68.9
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.9e-135 486.5 353 66.9
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.9e-135 486.5 353 66.9
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.2e-134 483.8 342 67.5
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.2e-134 483.8 341 67.7
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.2e-134 483.8 432 58.6
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.6e-134 483.4 340 65.9
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.8e-134 482.6 363 64.5
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.6e-134 482.3 384 62.2
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 4.7e-134 481.9 374 62.6
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.2e-134 481.5 362 64.9
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 6.2e-134 481.5 339 66.4
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 2.4e-133 479.6 364 63.2
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 4.0e-133 478.8 332 68.7
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.0e-132 476.5 336 66.4
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.6e-132 476.1 342 64.3
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 2.6e-132 476.1 347 65.1
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 3.4e-132 475.7 333 67.6
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.4e-132 475.3 331 68.9
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 4.4e-132 475.3 337 67.7
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.4e-130 470.3 362 62.4
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 1.9e-130 469.9 355 62.8
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 2.4e-130 469.5 369 61.2
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 2.4e-130 469.5 372 63.2
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 2.1e-129 466.5 351 63.8
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 2.1e-129 466.5 359 62.1
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 3.5e-129 465.7 336 66.1
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.0e-128 464.2 366 62.8
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.3e-128 463.8 340 66.8
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 2.3e-128 463.0 358 63.7
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.3e-128 463.0 341 64.5
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.9e-128 462.2 352 61.1
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.1e-127 460.7 333 65.8
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.9e-127 459.9 365 61.1
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 3.3e-127 459.1 370 59.7
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 9.6e-127 457.6 369 60.7
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 9.6e-127 457.6 373 61.4
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 9.6e-127 457.6 346 62.4
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.3e-126 457.2 353 63.2
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.6e-126 456.8 357 60.5
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 4.8e-126 455.3 389 58.9
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 6.2e-126 454.9 331 63.4
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.4e-125 453.8 357 60.2
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 3.1e-125 452.6 349 63.3
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 3.1e-125 452.6 331 61.9
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.2e-124 450.7 347 62.0
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 2.6e-124 449.5 396 56.6
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 4.4e-124 448.7 377 58.6
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 4.4e-124 448.7 340 63.5
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 2.4e-122 443.0 341 63.0
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 2.1e-121 439.9 352 63.6
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 6.6e-120 434.9 297 69.0
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.1e-119 434.1 331 63.1
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 1.5e-119 433.7 334 63.2
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 4.3e-119 432.2 337 62.9
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.6e-119 431.8 405 56.3
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 2.4e-117 426.4 336 59.5
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 3.1e-117 426.0 364 58.0
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.9e-117 424.9 328 62.2
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 1.2e-116 424.1 352 58.2
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 5.8e-116 421.8 333 63.7
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.1e-114 414.8 365 57.0
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.6e-113 413.7 337 60.2
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.7e-112 408.3 364 56.9
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 3.3e-111 406.0 297 67.3
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 4.8e-110 402.1 352 59.1
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-109 401.0 368 55.2
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 1.8e-109 400.2 346 60.1
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 2.4e-109 399.8 377 54.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 3.1e-109 399.4 357 56.3
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.5e-108 397.1 328 58.2
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 4.5e-108 395.6 325 59.1
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.9e-107 392.9 482 46.1
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 1.1e-106 391.0 353 54.7
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.2e-106 389.0 396 53.5
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 1.6e-105 387.1 322 58.1
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 6.0e-105 385.2 531 41.1
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 3.3e-103 379.4 397 51.1
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 3.1e-101 372.9 269 68.4
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 7.6e-100 368.2 263 68.4
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 1.7e-99 367.1 273 65.6
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.5e-97 359.4 332 55.1
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 6.3e-94 348.6 313 56.5
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 6.3e-94 348.6 236 69.1
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.1e-93 347.8 260 61.5
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 6.7e-88 328.6 356 48.0
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 3.3e-87 326.2 239 66.5
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 2.2e-86 323.6 338 48.2
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 2.2e-86 323.6 353 46.2
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 2.1e-81 307.0 343 50.1
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 3.0e-80 303.1 229 62.9
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 6.3e-78 295.4 338 46.7
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.6e-73 280.8 541 34.9
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 1.8e-69 267.3 195 65.6
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.1e-66 258.1 272 51.8
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.0e-64 251.5 320 44.7
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.2e-63 248.1 354 41.0
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 2.9e-59 233.4 181 63.5
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 8.5e-59 231.9 297 41.4
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 1.4e-53 214.5 195 52.8
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 5.7e-47 192.6 250 43.2
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 5.6e-42 176.0 361 33.0
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 8.0e-41 172.2 329 31.6
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 2.2e-38 164.1 304 32.9
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.1e-37 159.8 172 50.0
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 9.2e-37 158.7 113 64.6
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.3e-35 154.8 132 61.4
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 3.1e-32 143.7 81 81.5
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.9e-21 107.8 102 50.0
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 9.6e-18 95.5 63 65.1
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.2e-15 88.6 56 69.6
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.1e-10 72.0 31 96.8
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 6.2e-09 66.2 135 34.8
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 9.0e-08 62.4 34 76.5
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 2.6e-07 60.8 35 62.9


User provided reference genes

Program Settings