Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 0.0e+00 1529.2 779 100.0
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 0.0e+00 1108.2 790 74.4
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 0.0e+00 1104.4 785 74.5
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 0.0e+00 1097.4 784 73.7
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 3.0e-305 1051.6 792 71.6
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 3.1e-254 882.1 817 61.6
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 1.2e-218 763.8 784 56.2
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 1.4e-206 723.8 785 54.6
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 1.1e-185 654.4 780 50.8
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 4.1e-177 625.9 751 49.3
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 9.4e-134 481.9 783 40.0
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 3.1e-129 466.8 449 56.3
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 9.2e-129 465.3 783 39.8
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 4.5e-128 463.0 806 40.2
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 1.7e-127 461.1 780 40.1
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 2.9e-127 460.3 449 57.7
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 3.8e-127 459.9 800 39.9
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 3.8e-127 459.9 787 40.0
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 1.2e-123 448.4 449 55.2
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.5e-123 448.0 795 39.1
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 5.7e-123 446.0 795 39.4
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 6.4e-122 442.6 770 39.7
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 1.6e-120 438.0 797 38.8
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 4.6e-120 436.4 780 39.0
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 4.6e-120 436.4 803 38.1
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.0e-119 435.3 573 45.0
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.0e-119 433.0 779 39.2
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 5.0e-119 433.0 787 39.1
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 6.6e-119 432.6 790 38.2
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 1.6e-117 427.9 787 40.5
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.0e-116 425.2 790 38.4
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 4.0e-116 423.3 790 40.3
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 7.5e-115 419.1 748 38.0
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 9.8e-115 418.7 451 50.1
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.3e-114 418.3 369 59.9
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 2.2e-114 417.5 799 37.5
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 4.9e-114 416.4 382 56.3
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 1.1e-113 415.2 787 37.6
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 1.4e-113 414.8 876 34.9
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 9.2e-113 412.1 543 46.6
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 1.2e-112 411.8 545 47.2
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 1.6e-112 411.4 369 58.8
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 4.6e-112 409.8 342 62.0
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 3.0e-111 407.1 779 37.5
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 8.6e-111 405.6 340 62.9
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 8.6e-111 405.6 392 55.9
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.5e-110 404.1 779 37.4
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 2.5e-110 404.1 346 59.5
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 5.6e-110 402.9 561 44.9
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 1.6e-109 401.4 396 55.3
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 3.6e-109 400.2 346 59.0
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 1.1e-108 398.7 749 38.3
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 1.8e-108 397.9 564 45.0
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 2.3e-108 397.5 779 36.8
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 6.8e-108 396.0 475 49.1
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 1.2e-107 395.2 341 60.1
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 1.2e-107 395.2 737 36.9
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 1.5e-107 394.8 388 54.4
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 2.6e-107 394.0 388 54.4
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 2.6e-107 394.0 388 54.6
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 3.4e-107 393.7 340 60.0
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 7.5e-107 392.5 358 56.4
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 8.3e-106 389.0 583 40.7
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 1.4e-105 388.3 808 35.3
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 1.4e-105 388.3 368 56.0
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 2.4e-105 387.5 784 38.6
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 3.2e-105 387.1 359 55.2
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 9.2e-105 385.6 450 48.4
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.6e-104 384.8 380 53.2
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 2.1e-104 384.4 357 56.9
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 6.0e-104 382.9 372 53.8
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 6.0e-104 382.9 367 54.8
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 3.0e-103 380.6 337 59.3
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 5.1e-103 379.8 411 51.6
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 5.1e-103 379.8 343 56.9
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 8.6e-103 379.0 543 44.4
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.1e-102 378.6 787 36.1
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 5.6e-102 376.3 323 59.8
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 3.6e-101 373.6 343 56.0
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 4.0e-100 370.2 341 56.9
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 3.4e-99 367.1 359 54.3
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 3.8e-98 363.6 505 43.0
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 6.4e-98 362.8 308 60.1
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 1.9e-97 361.3 342 56.4
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 9.2e-97 359.0 517 43.9
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 4.6e-96 356.7 342 54.1
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 6.0e-96 356.3 361 52.4
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 2.3e-95 354.4 368 50.5
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 3.9e-95 353.6 368 50.5
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 3.9e-95 353.6 368 50.5
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 5.6e-94 349.7 384 50.5
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 7.3e-94 349.4 366 50.8
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 2.4e-92 344.4 540 40.9
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.2e-91 342.0 310 57.4
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.0e-91 341.3 412 46.6
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.6e-91 340.9 412 46.6
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 3.4e-91 340.5 350 52.3
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 3.4e-91 340.5 350 52.3
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 7.6e-91 339.3 360 52.2
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 9.9e-91 339.0 350 51.7
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 1.7e-90 338.2 537 41.0
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 2.2e-90 337.8 892 32.0
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.1e-89 335.5 566 40.5
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 5.4e-89 333.2 537 41.0
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 2.7e-88 330.9 378 48.9
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 4.6e-88 330.1 447 44.3
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 4.6e-88 330.1 329 53.5
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 2.7e-80 304.3 205 74.6
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 3.2e-73 280.8 251 60.6
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.6e-64 251.9 205 62.0
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 1.3e-61 242.3 468 35.7
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 3.1e-60 237.7 381 37.5
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 3.8e-58 230.7 228 52.2
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 3.6e-56 224.2 272 43.8
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 3.8e-50 204.1 296 42.2
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 1.8e-47 195.3 380 36.1
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 1.7e-45 188.7 407 35.4
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 2.0e-38 165.2 125 68.8
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 7.4e-38 163.3 551 29.8
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 1.1e-33 149.4 113 65.5
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 3.7e-29 134.4 146 50.0
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 8.2e-29 133.3 122 56.6
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 8.5e-26 123.2 146 45.2
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 2.2e-21 108.6 109 53.2
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 2.8e-21 108.2 282 27.7
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 2.4e-20 105.1 128 43.0
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 2.3e-18 98.6 96 52.1
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.4e-15 89.4 59 72.9
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 4.0e-15 87.8 174 29.9
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 3.1e-12 78.2 81 50.6
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 2.7e-11 75.1 67 59.7
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 2.7e-11 75.1 67 59.7
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 1.2e-08 66.2 55 58.2
QL01p034573 Quercus lobata HOM05D005647 ORTHO05D006968 5.7e-06 57.4 63 58.7


User provided reference genes

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