Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01335_v3 Cicer arietinum L. HOM05D002354 ORTHO05D002469 1.7e-57 225.7 110 100.0
TPR.G15254 Trifolium pratense HOM05D002354 ORTHO05D002469 1.6e-42 176.0 111 77.5
Medtr2g096670 Medicago truncatula HOM05D002354 ORTHO05D002469 2.7e-42 175.3 110 76.4
Psat5g282800 Pisum sativum HOM05D002354 ORTHO05D002469 2.3e-41 172.2 110 79.1
Glyma.13G334600 Glycine max HOM05D002354 ORTHO05D002469 5.6e-32 141.0 111 64.0
Lj3g0020748 Lotus japonicus HOM05D002354 ORTHO05D002469 7.5e-29 130.6 112 62.5
Phvul.L004143 Phaseolus vulgaris HOM05D002354 ORTHO05D002469 1.1e-27 126.7 100 65.0
arahy.Tifrunner.gnm1.ann1.8TSI1S Arachis hypogaea HOM05D002354 ORTHO05D002469 4.1e-27 124.8 110 53.6
arahy.Tifrunner.gnm1.ann1.9F3TVY Arachis hypogaea HOM05D002354 ORTHO05D002469 1.2e-26 123.2 110 52.7
arahy.Tifrunner.gnm1.ann1.C96M7R Arachis hypogaea HOM05D002354 ORTHO05D002469 2.3e-25 119.0 113 55.8
arahy.Tifrunner.gnm1.ann1.4PJH6V Arachis hypogaea HOM05D002354 ORTHO05D002469 4.3e-24 114.8 114 53.5
Ciclev10030119m.g Citrus clementina HOM05D002354 ORTHO05D002469 3.1e-22 108.6 109 49.5
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 2.0e-21 105.9 110 49.1
Duzib170G1002 Durio zibethinus HOM05D002354 ORTHO05D002469 1.7e-20 102.8 110 47.3
Potri.001G237300 Populus trichocarpa HOM05D002354 ORTHO05D002469 2.2e-20 102.4 112 48.2
Thecc.09G325200 Theobroma cacao HOM05D002354 ORTHO05D002469 4.9e-20 101.3 111 46.8
Potri.009G028600 Populus trichocarpa HOM05D002354 ORTHO05D002469 8.4e-20 100.5 109 46.8
Sabra09G0019800 Salix brachista HOM05D002354 ORTHO05D002469 5.4e-19 97.8 109 45.9
Cfa017408 Carpinus fangiana HOM05D002354 ORTHO05D002469 7.1e-19 97.4 110 44.5
AUR62001818 Chenopodium quinoa HOM05D002354 ORTHO05D002469 7.1e-19 97.4 109 42.2
Cc08_g08670 Coffea canephora HOM05D002354 ORTHO05D002469 1.2e-18 96.7 109 43.1
Haze_20760 Corylus avellana HOM05D002354 ORTHO05D002469 1.2e-18 96.7 110 43.6
Duzib168G1042 Durio zibethinus HOM05D002354 ORTHO05D002469 1.2e-18 96.7 109 46.8
Gohir.D07G100700 Gossypium hirsutum HOM05D002354 ORTHO05D002469 1.2e-18 96.7 108 47.2
Gorai.001G108600 Gossypium raimondii HOM05D002354 ORTHO05D002469 1.2e-18 96.7 108 47.2
Cc01_g12590 Coffea canephora HOM05D002354 ORTHO05D002469 1.6e-18 96.3 109 42.2
Gohir.A07G096300 Gossypium hirsutum HOM05D002354 ORTHO05D002469 2.7e-18 95.5 108 46.3
PGR102G1125 Punica granatum HOM05D002354 ORTHO05D002469 2.7e-18 95.5 116 43.1
AUR62009604 Chenopodium quinoa HOM05D002354 ORTHO05D002469 3.5e-18 95.1 109 41.3
Aqoxy4G02967 Aquilegia oxysepala HOM05D002354 ORTHO05D002469 6.0e-18 94.4 112 39.3
Atru.chr3.3845 Acer truncatum HOM05D002354 ORTHO05D002469 7.8e-18 94.0 112 45.5
Sabra16G0143000 Salix brachista HOM05D002354 ORTHO05D002469 7.8e-18 94.0 108 46.3
Sopen06g032390 Solanum pennellii HOM05D002354 ORTHO05D002469 1.7e-17 92.8 112 42.0
Eucgr.B02385 Eucalyptus grandis HOM05D002354 ORTHO05D002469 2.3e-17 92.4 113 39.8
CAN.G1362.1 Capsicum annuum HOM05D002354 ORTHO05D002469 3.0e-17 92.0 112 42.9
Peaxi162Scf00679g00213 Petunia axillaris HOM05D002354 ORTHO05D002469 3.0e-17 92.0 110 41.8
GSVIVG01034199001 Vitis vinifera HOM05D002354 ORTHO05D002469 3.9e-17 91.7 109 40.4
Cfa011471 Carpinus fangiana HOM05D002354 ORTHO05D002469 5.1e-17 91.3 113 45.1
Solyc11g066140.2 Solanum lycopersicum HOM05D002354 ORTHO05D002469 5.1e-17 91.3 114 45.6
Dinv01559 Davidia involucrata HOM05D002354 ORTHO05D002469 6.6e-17 90.9 113 45.1
PGSC0003DMG400030403 Solanum tuberosum HOM05D002354 ORTHO05D002469 6.6e-17 90.9 112 41.1
Nitab4.5_0007816g0010 Nicotiana tabacum HOM05D002354 ORTHO05D002469 8.7e-17 90.5 110 41.8
Sopen11g025910 Solanum pennellii HOM05D002354 ORTHO05D002469 8.7e-17 90.5 114 43.9
THA.LOC104826334 Tarenaya hassleriana HOM05D002354 ORTHO05D002469 8.7e-17 90.5 111 46.8
Solyc06g075970.4 Solanum lycopersicum HOM05D002354 ORTHO05D002469 1.1e-16 90.1 112 41.1
Ah.08g219140 Amaranthus hybridus HOM05D002354 ORTHO05D002469 1.5e-16 89.7 109 42.2
Dinv37191 Davidia involucrata HOM05D002354 ORTHO05D002469 1.5e-16 89.7 105 41.0
EL10Ac7g15983 Beta vulgaris HOM05D002354 ORTHO05D002469 3.3e-16 88.6 109 38.5
Nitab4.5_0005251g0010 Nicotiana tabacum HOM05D002354 ORTHO05D002469 3.3e-16 88.6 109 41.3
Manes.11G132400 Manihot esculenta HOM05D002354 ORTHO05D002469 4.3e-16 88.2 112 42.9
PSO384G1043 Papaver somniferum HOM05D002354 ORTHO05D002469 4.3e-16 88.2 113 39.8
PSO339G0575 Papaver somniferum HOM05D002354 ORTHO05D002469 5.6e-16 87.8 113 39.8
Peaxi162Scf00406g00316 Petunia axillaris HOM05D002354 ORTHO05D002469 5.6e-16 87.8 109 39.4
Cfa017406 Carpinus fangiana HOM05D002354 ORTHO05D002469 9.6e-16 87.0 110 38.2
Actinidia37215 Actinidia chinensis HOM05D002354 ORTHO05D002469 1.2e-15 86.7 112 42.9
CiPaw.10G144500 Carya illinoinensis HOM05D002354 ORTHO05D002469 1.6e-15 86.3 110 39.1
Nitab4.5_0001304g0030 Nicotiana tabacum HOM05D002354 ORTHO05D002469 1.6e-15 86.3 109 40.4
TWI31G0008 Tripterygium wilfordii HOM05D002354 ORTHO05D002469 2.1e-15 85.9 110 40.9
CAN.G394.45 Capsicum annuum HOM05D002354 ORTHO05D002469 2.8e-15 85.5 110 40.0
Nn2g10412 Nelumbo nucifera HOM05D002354 ORTHO05D002469 3.6e-15 85.1 116 44.0
Nitab4.5_0000610g0020 Nicotiana tabacum HOM05D002354 ORTHO05D002469 3.6e-15 85.1 110 38.2
GSVIVG01025002001 Vitis vinifera HOM05D002354 ORTHO05D002469 3.6e-15 85.1 112 42.9
Dinv35621 Davidia involucrata HOM05D002354 ORTHO05D002469 4.7e-15 84.7 106 40.6
Nitab4.5_0000610g0090 Nicotiana tabacum HOM05D002354 ORTHO05D002469 4.7e-15 84.7 110 38.2
PGSC0003DMG400000403 Solanum tuberosum HOM05D002354 ORTHO05D002469 4.7e-15 84.7 115 41.7
Eucgr.K03147 Eucalyptus grandis HOM05D002354 ORTHO05D002469 8.1e-15 84.0 108 36.1
Cfa017407 Carpinus fangiana HOM05D002354 ORTHO05D002469 1.1e-14 83.6 105 39.0
CSS0022593 Camellia sinensis var. sinensis HOM05D002354 ORTHO05D002469 1.4e-14 83.2 111 41.4
CSS0019386 Camellia sinensis var. sinensis HOM05D002354 ORTHO05D002469 3.1e-14 82.0 112 36.6
Atru.chr8.1937 Acer truncatum HOM05D002354 ORTHO05D002469 5.2e-14 81.3 110 39.1
Actinidia26449 Actinidia chinensis HOM05D002354 ORTHO05D002469 5.2e-14 81.3 109 38.5
Aa31LG5G7420 Aethionema arabicum HOM05D002354 ORTHO05D002469 5.2e-14 81.3 111 42.3
MBI14_g11681_MAGBIO Magnolia biondii HOM05D002354 ORTHO05D002469 5.2e-14 81.3 122 37.7
CiPaw.14G070500 Carya illinoinensis HOM05D002354 ORTHO05D002469 6.9e-14 80.9 114 37.7
Migut.A00597 Erythranthe guttata HOM05D002354 ORTHO05D002469 6.9e-14 80.9 111 37.8
QL07p031174 Quercus lobata HOM05D002354 ORTHO05D002469 9.0e-14 80.5 110 36.4
PSO339G1204 Papaver somniferum HOM05D002354 ORTHO05D002469 1.2e-13 80.1 117 38.5
QL07p047888 Quercus lobata HOM05D002354 ORTHO05D002469 1.2e-13 80.1 110 35.5
Sed0014844 Sechium edule HOM05D002354 ORTHO05D002469 1.5e-13 79.7 109 43.1
Hund04984 Selenicereus undatus HOM05D002354 ORTHO05D002469 2.0e-13 79.3 104 41.3
FAN25G1071 Fragaria x ananassa HOM05D002354 ORTHO05D002469 2.6e-13 79.0 113 35.4
MD03G1096700 Malus domestica HOM05D002354 ORTHO05D002469 2.6e-13 79.0 98 42.9
Cfa011472 Carpinus fangiana HOM05D002354 ORTHO05D002469 3.4e-13 78.6 88 44.3
FvH4_3g35590 Fragaria vesca HOM05D002354 ORTHO05D002469 3.4e-13 78.6 118 36.4
FAN11G0193 Fragaria x ananassa HOM05D002354 ORTHO05D002469 3.4e-13 78.6 118 36.4
FAN11G3448 Fragaria x ananassa HOM05D002354 ORTHO05D002469 3.4e-13 78.6 118 36.4
PSO384G1267 Papaver somniferum HOM05D002354 ORTHO05D002469 3.4e-13 78.6 118 37.3
MD11G1142900 Malus domestica HOM05D002354 ORTHO05D002469 4.4e-13 78.2 108 38.9
ECA247G2148 Erigeron canadensis HOM05D002354 ORTHO05D002469 5.8e-13 77.8 116 41.4
FAN21G2655 Fragaria x ananassa HOM05D002354 ORTHO05D002469 7.6e-13 77.4 113 34.5
CARHR121900 Cardamine hirsuta HOM05D002354 ORTHO05D002469 9.9e-13 77.0 113 43.4
Oeu017095.1 Olea europaea HOM05D002354 ORTHO05D002469 9.9e-13 77.0 113 34.5
MSTRG.11900 Avicennia marina HOM05D002354 ORTHO05D002469 1.3e-12 76.6 110 37.3
Prupe.6G081000 Prunus persica HOM05D002354 ORTHO05D002469 1.3e-12 76.6 99 41.4
QL07p031156 Quercus lobata HOM05D002354 ORTHO05D002469 1.7e-12 76.3 109 36.7
CiPaw.13G097200 Carya illinoinensis HOM05D002354 ORTHO05D002469 2.9e-12 75.5 112 35.7
QL07p047879 Quercus lobata HOM05D002354 ORTHO05D002469 2.9e-12 75.5 109 36.7
RcHm_v2.0_Chr5g0063771 Rosa chinensis HOM05D002354 ORTHO05D002469 2.9e-12 75.5 94 37.2
CANSAT54G0244 Cannabis sativa HOM05D002354 ORTHO05D002469 4.9e-12 74.7 127 34.6
Ciclev10011084m.g Citrus clementina HOM05D002354 ORTHO05D002469 4.9e-12 74.7 111 35.1
DCAR_005311 Daucus carota HOM05D002354 ORTHO05D002469 4.9e-12 74.7 112 33.9
Lj3g0011440 Lotus japonicus HOM05D002354 ORTHO05D002469 6.4e-12 74.3 104 47.1
Lalb_Chr01g0019301 Lupinus albus HOM05D002354 ORTHO05D002469 6.4e-12 74.3 109 32.1
Cpa.g.sc190.8 Carica papaya HOM05D002354 ORTHO05D002469 1.1e-11 73.6 124 32.3
Gohir.D01G212700 Gossypium hirsutum HOM05D002354 ORTHO05D002469 1.9e-11 72.8 111 36.9
Gorai.002G258700 Gossypium raimondii HOM05D002354 ORTHO05D002469 1.9e-11 72.8 111 36.9
Lj2A98T46 Lonicera japonica HOM05D002354 ORTHO05D002469 1.9e-11 72.8 114 36.8
A07p19240 Brassica napus HOM05D002354 ORTHO05D002469 3.2e-11 72.0 114 42.1
BraA07t29633Z Brassica rapa HOM05D002354 ORTHO05D002469 3.2e-11 72.0 114 42.1
AT2G28780 Arabidopsis thaliana HOM05D002354 ORTHO05D002469 5.4e-11 71.2 115 42.6
BcaC02g11009 Brassica carinata HOM05D002354 ORTHO05D002469 1.2e-10 70.1 114 41.2
C04p22230 Brassica napus HOM05D002354 ORTHO05D002469 1.2e-10 70.1 114 41.2
BolC4t23743H Brassica oleracea HOM05D002354 ORTHO05D002469 1.2e-10 70.1 114 41.2
BcaC02g08139 Brassica carinata HOM05D002354 ORTHO05D002469 1.6e-10 69.7 112 42.9
C04p57960 Brassica napus HOM05D002354 ORTHO05D002469 1.6e-10 69.7 112 42.9
BolC4t27322H Brassica oleracea HOM05D002354 ORTHO05D002469 1.6e-10 69.7 112 42.9
Lj2C4G7 Lonicera japonica HOM05D002354 ORTHO05D002469 1.6e-10 69.7 114 36.0
Sp4g11620 Schrenkiella parvula HOM05D002354 ORTHO05D002469 1.6e-10 69.7 114 43.0
A04p21850 Brassica napus HOM05D002354 ORTHO05D002469 2.1e-10 69.3 115 43.5
BraA04t17751Z Brassica rapa HOM05D002354 ORTHO05D002469 2.1e-10 69.3 115 43.5
PGR004G1690 Punica granatum HOM05D002354 ORTHO05D002469 2.1e-10 69.3 113 33.6
BcaB02g10201 Brassica carinata HOM05D002354 ORTHO05D002469 3.5e-10 68.6 114 40.4
MELO3C020655.2 Cucumis melo HOM05D002354 ORTHO05D002469 4.6e-10 68.2 113 36.3
Duzib093G0306 Durio zibethinus HOM05D002354 ORTHO05D002469 4.6e-10 68.2 107 39.3
Lalb_Chr25g0289581 Lupinus albus HOM05D002354 ORTHO05D002469 4.6e-10 68.2 110 30.9
arahy.Tifrunner.gnm1.ann1.700R0F Arachis hypogaea HOM05D002354 ORTHO05D002469 6.0e-10 67.8 106 30.2
arahy.Tifrunner.gnm1.ann1.9XV86M Arachis hypogaea HOM05D002354 ORTHO05D002469 6.0e-10 67.8 106 30.2
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.0e-10 67.8 96 39.6
Lsat_1_v5_gn_1_120601 Lactuca sativa HOM05D002354 ORTHO05D002469 6.0e-10 67.8 113 38.9
AL4G23310 Arabidopsis lyrata HOM05D002354 ORTHO05D002469 7.8e-10 67.4 115 41.7
Thhalv10016268m.g Eutrema salsugineum HOM05D002354 ORTHO05D002469 7.8e-10 67.4 116 40.5
BcaB06g28248 Brassica carinata HOM05D002354 ORTHO05D002469 1.0e-09 67.0 114 43.9
COL.COLO4_14833 Corchorus olitorius HOM05D002354 ORTHO05D002469 1.0e-09 67.0 102 35.3
SalBow1G0516 Salvia bowleyana HOM05D002354 ORTHO05D002469 1.3e-09 66.6 109 37.6
arahy.Tifrunner.gnm1.ann1.W1F8YE Arachis hypogaea HOM05D002354 ORTHO05D002469 1.7e-09 66.2 106 32.1
Carub.0004s0977 Capsella rubella HOM05D002354 ORTHO05D002469 1.7e-09 66.2 115 40.9
FvH4_6g14240 Fragaria vesca HOM05D002354 ORTHO05D002469 1.7e-09 66.2 96 39.6
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.7e-09 66.2 96 39.6
Sed0003656 Sechium edule HOM05D002354 ORTHO05D002469 1.7e-09 66.2 105 41.0
Lj1A157T39 Lonicera japonica HOM05D002354 ORTHO05D002469 2.3e-09 65.9 109 35.8
SalBow1G1614 Salvia bowleyana HOM05D002354 ORTHO05D002469 2.3e-09 65.9 109 36.7
THA.LOC104816079 Tarenaya hassleriana HOM05D002354 ORTHO05D002469 2.3e-09 65.9 109 35.8
Sed0020419 Sechium edule HOM05D002354 ORTHO05D002469 3.0e-09 65.5 118 32.2
vmacro20135 Vaccinium macrocarpon HOM05D002354 ORTHO05D002469 3.0e-09 65.5 95 38.9
DCAR_017876 Daucus carota HOM05D002354 ORTHO05D002469 3.9e-09 65.1 115 33.0
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 3.9e-09 65.1 130 32.3
TPR.G35242 Trifolium pratense HOM05D002354 ORTHO05D002469 5.1e-09 64.7 106 29.2
Rhsim05G0190000 Rhododendron simsii HOM05D002354 ORTHO05D002469 8.7e-09 63.9 107 37.4
Thecc.05G042100 Theobroma cacao HOM05D002354 ORTHO05D002469 1.9e-08 62.8 111 33.3
ClCG04G008310 Citrullus lanatus HOM05D002354 ORTHO05D002469 3.3e-08 62.0 120 30.8
CsaV3_1G033960 Cucumis sativus L. HOM05D002354 ORTHO05D002469 4.3e-08 61.6 104 37.5
CsaV3_1G033980 Cucumis sativus L. HOM05D002354 ORTHO05D002469 7.3e-08 60.8 113 34.5
HanXRQChr04g0107041 Helianthus annuus HOM05D002354 ORTHO05D002469 9.6e-08 60.5 116 39.7
Peaxi162Scf00009g02110 Petunia axillaris HOM05D002354 ORTHO05D002469 9.6e-08 60.5 101 31.7
Sopen10g034160 Solanum pennellii HOM05D002354 ORTHO05D002469 9.6e-08 60.5 94 30.9
ClCG03G001680 Citrullus lanatus HOM05D002354 ORTHO05D002469 1.6e-07 59.7 112 33.0
Glyma.03G171200 Glycine max HOM05D002354 ORTHO05D002469 1.6e-07 59.7 93 30.1
Prupe.6G252300 Prunus persica HOM05D002354 ORTHO05D002469 1.6e-07 59.7 88 33.0
CsaV3_4G024830 Cucumis sativus L. HOM05D002354 ORTHO05D002469 2.1e-07 59.3 119 31.1
Nitab4.5_0000652g0150 Nicotiana tabacum HOM05D002354 ORTHO05D002469 2.8e-07 58.9 106 34.0
Sc01g0004230 Simmondsia chinensis HOM05D002354 ORTHO05D002469 2.8e-07 58.9 101 35.6
Lsat_1_v5_gn_9_18020 Lactuca sativa HOM05D002354 ORTHO05D002469 3.6e-07 58.5 109 28.4
TWI53G1334 Tripterygium wilfordii HOM05D002354 ORTHO05D002469 3.6e-07 58.5 109 30.3
MELO3C020660.2 Cucumis melo HOM05D002354 ORTHO05D002469 4.8e-07 58.2 101 35.6
Solyc10g084720.1 Solanum lycopersicum HOM05D002354 ORTHO05D002469 8.1e-07 57.4 94 29.8
RcHm_v2.0_Chr3g0467201 Rosa chinensis HOM05D002354 ORTHO05D002469 1.1e-06 57.0 75 37.3
MELO3C003118.2 Cucumis melo HOM05D002354 ORTHO05D002469 1.4e-06 56.6 119 29.4
Prupe.6G250900 Prunus persica HOM05D002354 ORTHO05D002469 1.8e-06 56.2 96 35.4
VMungo1383G1831 Vigna mungo HOM05D002354 ORTHO05D002469 1.8e-06 56.2 106 26.4
MD12G1140200 Malus domestica HOM05D002354 ORTHO05D002469 2.4e-06 55.8 88 30.7
Lj1g0008459 Lotus japonicus HOM05D002354 ORTHO05D002469 4.0e-06 55.1 105 30.5
Nitab4.5_0004912g0090 Nicotiana tabacum HOM05D002354 ORTHO05D002469 6.9e-06 54.3 106 32.1
Potri.006G082000 Populus trichocarpa HOM05D002354 ORTHO05D002469 9.0e-06 53.9 106 33.0


User provided reference genes

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