Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 3.2e-224 781.6 437 100.0
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 3.7e-196 688.3 439 87.9
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 2.7e-194 682.2 456 84.4
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.9e-188 662.1 438 84.9
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 4.3e-184 648.3 440 83.4
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 7.1e-179 630.9 438 79.7
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 2.5e-176 622.5 440 80.7
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.2e-175 620.2 440 81.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 3.6e-175 618.6 439 79.0
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 2.6e-173 612.5 414 84.8
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 7.6e-173 610.9 436 78.7
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 7.1e-163 577.8 440 76.6
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 4.5e-157 558.5 437 71.9
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.2e-149 533.9 438 69.2
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 3.4e-149 532.3 438 69.6
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 3.8e-148 528.9 438 68.0
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.9e-147 526.6 448 67.0
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.5e-147 526.2 438 68.0
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.2e-146 523.9 438 68.3
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 1.2e-146 523.9 438 68.0
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 3.5e-146 522.3 438 66.9
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 3.9e-145 518.8 438 66.7
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 9.6e-144 514.2 445 66.5
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 9.6e-144 514.2 445 66.5
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 3.7e-143 512.3 450 65.6
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 4.0e-142 508.8 452 67.0
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 5.3e-142 508.4 451 64.5
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.5e-141 506.9 429 70.2
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 2.6e-141 506.1 451 65.2
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 3.4e-141 505.8 449 65.9
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 3.4e-141 505.8 438 66.4
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 4.5e-141 505.4 437 66.6
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.3e-140 503.8 448 63.8
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 4.9e-140 501.9 437 66.4
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 6.5e-140 501.5 444 66.0
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 6.5e-140 501.5 437 66.1
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 3.5e-138 495.7 438 64.6
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 1.8e-137 493.4 441 62.8
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 4.3e-136 488.8 449 62.4
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 5.7e-136 488.4 467 61.2
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 1.6e-135 486.9 449 64.1
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 2.2e-135 486.5 438 64.8
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.2e-133 480.7 440 64.1
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.5e-133 480.3 449 61.5
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 1.5e-133 480.3 448 62.1
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 2.0e-133 479.9 421 66.3
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 2.0e-133 479.9 449 62.6
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 3.4e-133 479.2 455 62.0
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.5e-133 478.8 444 64.0
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 5.9e-133 478.4 448 62.3
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 2.9e-132 476.1 457 62.1
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 5.0e-132 475.3 438 63.0
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 4.2e-131 472.2 437 62.9
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.2e-130 470.7 447 61.1
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.6e-130 470.3 448 60.0
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 6.1e-130 468.4 449 59.5
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 6.1e-130 468.4 413 66.1
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 6.7e-129 464.9 444 62.2
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 1.1e-128 464.2 448 60.3
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 3.3e-128 462.6 447 59.7
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 4.3e-128 462.2 450 60.9
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 3.7e-127 459.1 444 61.5
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 6.3e-127 458.4 436 61.7
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 6.3e-127 458.4 427 62.3
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 6.3e-127 458.4 427 62.3
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 1.1e-126 457.6 450 59.8
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 2.4e-126 456.4 436 62.2
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-126 456.4 446 59.2
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 5.3e-126 455.3 442 58.8
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 6.9e-126 454.9 435 62.1
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 6.9e-126 454.9 456 60.1
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.2e-125 454.1 441 59.4
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 3.4e-125 452.6 444 59.9
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 3.4e-125 452.6 450 60.0
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 4.5e-125 452.2 445 58.0
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.5e-125 452.2 443 60.7
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 7.7e-125 451.4 439 59.7
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 8.5e-124 448.0 436 61.5
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 8.5e-124 448.0 454 60.1
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.5e-124 448.0 380 67.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 1.4e-123 447.2 448 58.5
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.2e-122 444.1 436 61.0
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.7e-122 443.0 448 58.5
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 1.0e-121 441.0 435 60.7
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 1.0e-121 441.0 446 60.5
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 8.8e-121 438.0 489 57.7
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.5e-120 437.2 437 60.4
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 2.6e-117 426.4 441 59.6
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.1e-115 421.0 437 58.8
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.5e-115 420.6 478 55.9
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 5.5e-115 418.7 404 59.2
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.6e-114 417.2 446 59.4
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 1.7e-108 397.1 435 57.7
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 4.2e-107 392.5 436 56.7
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.0e-106 388.3 345 64.9
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 4.2e-99 365.9 459 50.5
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 9.4e-99 364.8 380 60.0
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.7e-95 354.0 315 65.1
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 2.0e-93 347.1 461 48.8
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 3.8e-92 342.8 359 55.4
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.0e-90 335.1 391 53.7
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 1.0e-89 334.7 379 52.5
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.8e-89 334.0 430 50.2
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 8.3e-87 325.1 419 50.4
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 7.0e-86 322.0 251 75.7
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 1.3e-84 317.8 270 66.3
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.1e-83 314.7 418 50.0
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.6e-82 310.8 442 45.2
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 4.0e-81 306.2 459 45.8
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.5e-80 304.3 350 53.7
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 1.3e-79 301.2 461 46.0
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 6.8e-73 278.9 189 77.8
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.9e-70 270.8 271 56.8
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.5e-69 266.5 229 67.7
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 3.1e-65 253.4 334 50.6
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.2e-58 231.5 368 46.2
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 1.2e-56 224.9 271 54.6
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 2.2e-55 220.7 220 58.6
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 5.3e-49 199.5 307 46.3
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 7.6e-48 195.7 249 52.6
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 2.9e-47 193.7 449 35.2
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 2.4e-46 190.7 366 40.4
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 3.3e-43 180.3 381 36.0
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 2.8e-42 177.2 275 45.8
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.6e-42 176.8 168 61.3
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 6.9e-41 172.6 191 55.5
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 2.4e-38 164.1 468 32.5
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 1.6e-37 161.4 149 63.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.5e-37 160.2 144 62.5
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 4.8e-34 149.8 135 63.7
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 3.1e-33 147.1 95 92.6
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 2.7e-29 134.0 144 56.2
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 8.7e-28 129.0 195 45.6
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 7.4e-27 125.9 165 48.5
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 3.2e-22 110.5 92 67.4
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 9.3e-22 109.0 148 51.4
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 3.7e-18 97.1 106 60.4
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 5.3e-17 93.2 67 74.6
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.9e-14 84.7 86 57.0
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 7.2e-14 82.8 188 38.8
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 3.3e-11 73.9 67 67.2
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 2.9e-07 60.8 183 27.9
RcHm_v2.0_Chr4g0405851 Rosa chinensis HOM05D005278 ORTHO05D006500 1.1e-06 58.9 37 78.4


User provided reference genes

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