Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 6.9e-46 186.8 86 100.0
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.8e-41 172.2 83 91.6
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 5.1e-41 170.6 81 93.8
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 5.7e-40 167.2 86 90.7
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 7.4e-40 166.8 80 93.8
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 9.7e-40 166.4 86 90.7
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.7e-39 165.6 80 92.5
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 2.2e-39 165.2 86 90.7
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 8.2e-39 163.3 86 86.0
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.4e-38 162.5 82 85.4
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 4.1e-38 161.0 86 86.0
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 7.0e-38 160.2 86 86.0
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 3.5e-37 157.9 95 80.0
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 4.5e-37 157.5 95 80.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.0e-36 156.4 86 81.4
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 1.7e-36 155.6 86 82.6
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.8e-36 154.5 86 80.2
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 3.8e-36 154.5 86 80.2
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 3.8e-36 154.5 86 80.2
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 8.5e-36 153.3 86 80.2
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 8.5e-36 153.3 86 77.9
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.1e-35 152.9 85 82.4
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.9e-35 152.1 79 82.3
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.6e-34 149.1 79 82.3
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.6e-34 149.1 79 82.3
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.1e-34 148.7 86 76.7
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 2.1e-34 148.7 86 76.7
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.6e-34 147.9 79 82.3
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.6e-34 147.9 79 82.3
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 3.6e-34 147.9 86 77.9
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.7e-34 147.5 78 82.1
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 4.7e-34 147.5 86 77.9
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 8.0e-34 146.7 86 77.9
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 8.0e-34 146.7 86 79.1
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 76.7
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 3.9e-33 144.4 86 75.6
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.9e-33 144.4 86 76.7
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 3.9e-33 144.4 86 77.9
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 3.9e-33 144.4 86 77.9
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 3.9e-33 144.4 86 77.9
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 6.7e-33 143.7 86 70.9
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.1e-32 142.9 68 92.6
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.5e-32 142.5 80 75.0
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 3.3e-32 141.4 84 71.4
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 3.3e-32 141.4 85 72.9
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.7e-32 140.6 87 73.6
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 5.7e-32 140.6 87 73.6
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 7.4e-32 140.2 86 74.4
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 9.7e-32 139.8 86 72.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.3e-31 139.4 76 76.3
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.3e-31 139.4 76 76.3
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.3e-31 139.4 86 70.9
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.7e-31 139.0 87 74.7
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.7e-31 139.0 68 91.2
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.7e-31 139.0 78 74.4
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.7e-31 139.0 78 74.4
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.7e-31 139.0 87 73.6
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.2e-31 138.7 87 73.6
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.2e-31 138.7 87 73.6
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 2.2e-31 138.7 82 72.0
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.8e-31 138.3 86 70.9
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.8e-31 138.3 76 76.3
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 4.8e-31 137.5 86 73.3
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 87 72.4
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 6.3e-31 137.1 87 72.4
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 6.3e-31 137.1 86 72.1
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 8.2e-31 136.7 73 82.2
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 8.2e-31 136.7 79 72.2
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.4e-30 136.0 86 68.6
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.4e-30 136.0 78 76.9
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.8e-30 135.6 79 73.4
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.8e-30 135.6 76 76.3
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 2.4e-30 135.2 76 75.0
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 3.1e-30 134.8 79 73.4
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.1e-30 134.8 76 75.0
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 3.1e-30 134.8 76 75.0
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.1e-30 134.8 78 75.6
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 3.1e-30 134.8 86 73.3
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 4.1e-30 134.4 84 70.2
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 4.1e-30 134.4 87 71.3
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 5.3e-30 134.0 86 68.6
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 5.3e-30 134.0 86 70.9
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 7.0e-30 133.7 84 69.0
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 7.0e-30 133.7 86 68.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 7.0e-30 133.7 86 70.9
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.0e-29 132.1 86 69.8
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.0e-29 132.1 75 69.3
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 4.5e-29 131.0 86 68.6
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 5.9e-29 130.6 69 82.6
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 5.9e-29 130.6 86 70.9
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 7.7e-29 130.2 95 62.1
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 7.7e-29 130.2 87 64.4
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 7.7e-29 130.2 86 69.8
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.0e-28 129.8 74 78.4
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.0e-28 129.8 86 68.6
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.7e-28 129.0 86 70.9
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.2e-28 128.6 86 68.6
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.2e-28 128.6 86 68.6
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 2.9e-28 128.3 90 66.7
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 5.0e-28 127.5 98 60.2
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 5.0e-28 127.5 86 66.3
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 6.5e-28 127.1 63 84.1
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.5e-28 127.1 92 63.0
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 8.5e-28 126.7 86 67.4
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 8.5e-28 126.7 87 62.1
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.1e-27 126.3 85 68.2
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.5e-27 125.9 86 65.1
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.9e-27 125.6 70 78.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.9e-27 125.6 70 78.6
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.9e-27 125.6 101 61.4
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.5e-27 125.2 70 77.1
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 4.2e-27 124.4 81 63.0
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 7.2e-27 123.6 78 64.1
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 2.1e-26 122.1 86 68.6
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 2.7e-26 121.7 115 52.2
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.6e-26 121.3 86 67.4
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 6.1e-26 120.6 76 69.7
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 6.1e-26 120.6 87 65.5
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 3.0e-25 118.2 65 75.4
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 3.0e-25 118.2 87 64.4
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 5.2e-25 117.5 72 65.3
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 6.7e-25 117.1 60 85.0
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.5e-24 115.9 86 69.8
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 3.3e-24 114.8 72 69.4
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 9.7e-24 113.2 68 76.5
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 9.7e-24 113.2 79 62.0
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 2.8e-23 111.7 87 60.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 6.3e-23 110.5 79 63.3
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 6.3e-23 110.5 87 64.4
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.1e-22 109.8 85 58.8
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.4e-22 109.4 53 84.9
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.8e-22 109.0 71 64.8
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.4e-22 108.6 54 87.0
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 2.4e-22 108.6 52 86.5
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 3.1e-22 108.2 99 56.6
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 4.1e-22 107.8 58 79.3
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 5.3e-22 107.5 54 83.3
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 2.7e-21 105.1 68 69.1
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 4.5e-21 104.4 78 65.4
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 7.7e-21 103.6 71 56.3
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.7e-20 102.4 84 53.6
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.9e-20 101.7 56 80.4
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 3.8e-20 101.3 71 53.5
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 5.0e-20 100.9 52 82.7
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.2e-18 96.3 52 82.7
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 2.1e-18 95.5 54 72.2
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 2.1e-18 95.5 101 50.5
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 6.1e-18 94.0 70 65.7
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 5.2e-17 90.9 124 40.3
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 6.8e-17 90.5 72 62.5
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 3.7e-15 84.7 40 90.0
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 4.8e-15 84.3 64 53.1
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 1.7e-12 75.9 59 64.4
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.9e-12 75.1 45 73.3
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.1e-11 73.2 57 52.6
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 1.4e-09 66.2 58 48.3
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 3.0e-09 65.1 40 62.5
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 2.0e-08 62.4 60 43.3
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.1e-06 56.6 109 33.9
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 4.1e-06 54.7 44 50.0


User provided reference genes

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