Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 3.1e-199 698.4 373 100.0
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 5.2e-138 495.0 336 81.5
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 3.5e-118 429.1 382 64.9
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 5.2e-114 415.2 338 71.6
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 6.2e-107 391.7 355 66.5
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 3.7e-104 382.5 335 66.0
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 1.1e-103 380.9 337 65.3
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 5.6e-100 368.6 339 64.3
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 3.6e-99 365.9 336 63.4
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 5.4e-95 352.1 335 61.2
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.2e-94 350.9 336 63.7
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 1.5e-92 344.0 335 61.5
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 6.0e-78 295.4 336 55.1
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.1e-76 291.2 339 52.2
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-76 290.0 342 52.6
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.5e-76 290.0 341 51.6
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 4.3e-76 289.3 360 51.1
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 1.1e-74 284.6 390 47.9
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 3.1e-74 283.1 346 52.9
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 1.2e-73 281.2 339 49.9
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.3e-72 277.7 335 51.6
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.9e-72 276.6 336 51.2
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 3.8e-72 276.2 340 50.9
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 8.4e-72 275.0 339 51.9
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 8.4e-72 275.0 339 49.3
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 7.1e-71 271.9 289 55.7
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 9.3e-71 271.6 338 50.0
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 3.3e-68 263.1 340 49.4
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 5.6e-68 262.3 324 51.2
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 8.1e-67 258.5 372 45.4
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.1e-66 258.1 248 58.1
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.4e-66 256.9 248 57.7
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-65 254.6 248 58.1
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 9.9e-65 251.5 348 50.0
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 3.8e-64 249.6 338 50.0
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.4e-64 248.4 245 57.6
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 1.9e-63 247.3 383 44.1
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.4e-63 246.9 338 49.7
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 4.2e-63 246.1 241 57.7
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 5.5e-63 245.7 341 46.6
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.1e-63 245.4 344 46.5
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.2e-62 244.6 343 44.9
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.5e-62 243.0 348 46.8
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 7.9e-62 241.9 344 47.4
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.8e-61 240.7 341 45.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 8.7e-61 238.4 348 45.4
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 8.7e-61 238.4 347 47.3
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.3e-60 236.1 248 54.8
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 9.6e-60 235.0 339 46.6
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 3.7e-59 233.0 386 42.5
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 4.8e-59 232.6 339 46.6
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 5.3e-58 229.2 351 46.2
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 4.5e-57 226.1 307 48.9
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.3e-56 224.6 276 51.4
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.2e-56 223.8 347 46.4
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 6.5e-56 222.2 344 44.2
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 4.2e-55 219.5 341 42.8
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.1e-54 217.2 339 45.4
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 6.0e-54 215.7 190 60.0
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 6.0e-54 215.7 222 55.0
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 7.9e-54 215.3 342 42.7
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 1.8e-53 214.2 340 42.9
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 3.9e-53 213.0 224 54.9
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.5e-52 211.1 348 40.5
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 5.7e-52 209.1 355 41.7
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.3e-51 208.0 348 41.7
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.3e-51 208.0 340 42.4
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.6e-51 207.6 338 42.6
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.8e-51 206.8 338 43.2
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 3.7e-51 206.5 289 49.1
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 6.3e-51 205.7 341 41.3
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 8.2e-51 205.3 305 43.9
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-50 204.5 341 41.1
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 5.3e-50 202.6 258 51.6
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 9.0e-50 201.8 341 41.3
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 4.5e-49 199.5 286 42.3
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.9e-49 199.1 323 43.7
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 7.7e-49 198.7 351 41.0
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.3e-48 198.0 354 40.1
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.7e-48 197.6 344 40.4
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.7e-48 197.6 317 47.6
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 3.8e-48 196.4 347 40.6
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 3.8e-48 196.4 337 40.7
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 5.0e-48 196.1 351 43.3
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 5.0e-48 196.1 351 43.3
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 6.5e-48 195.7 337 42.4
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.4e-47 194.5 354 41.0
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.2e-46 191.4 272 47.4
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.0e-45 188.3 345 40.6
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.4e-45 188.0 331 40.5
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.8e-45 187.6 290 41.4
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.8e-45 187.6 335 39.7
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.9e-45 186.4 335 40.3
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 6.7e-45 185.7 339 44.8
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.5e-44 184.5 338 40.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.9e-44 184.1 339 37.8
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-43 181.4 346 39.0
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.8e-43 179.5 335 39.1
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 6.3e-43 179.1 346 39.9
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 6.3e-43 179.1 305 43.0
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 1.8e-42 177.6 345 38.3
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.1e-42 176.4 250 44.8
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 1.2e-41 174.9 345 38.8
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.2e-41 174.9 345 38.6
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 3.4e-41 173.3 170 57.1
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.3e-40 171.4 344 38.4
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.9e-40 170.2 342 37.1
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 2.9e-40 170.2 333 38.7
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.0e-40 169.5 292 40.4
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 8.5e-40 168.7 286 39.9
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 2.7e-38 163.7 341 37.0
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 7.9e-38 162.2 366 37.2
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 6.7e-37 159.1 221 51.1
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 5.3e-34 149.4 298 39.3
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 3.4e-33 146.7 286 37.1
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 8.5e-32 142.1 355 34.6
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.1e-31 141.7 339 33.9
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.1e-31 141.7 339 33.9
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.5e-31 140.6 353 35.4
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.1e-30 137.5 162 46.3
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 5.2e-29 132.9 342 32.7
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 1.1e-26 125.2 74 83.8
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.4e-26 124.0 350 33.1
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.1e-26 123.6 156 42.9
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 8.8e-21 105.5 359 29.0
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.4e-18 98.2 198 34.3
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 7.0e-18 95.9 164 42.1
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 9.1e-18 95.5 125 48.8
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.0e-17 94.4 176 40.9
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 2.5e-15 87.4 84 61.9
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.4e-10 71.6 278 25.5
arahy.Tifrunner.gnm1.ann1.KUP0VV Arachis hypogaea HOM05D000351 ORTHO05D001519 1.7e-08 64.7 47 72.3
arahy.Tifrunner.gnm1.ann1.6S8GSB Arachis hypogaea HOM05D006491 ORTHO05D008412 1.2e-06 58.5 47 66.0


User provided reference genes

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