Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 1.3e-91 339.7 170 100.0
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 3.2e-71 271.9 170 83.5
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 1.5e-68 263.1 169 79.3
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 6.3e-67 257.7 170 77.6
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 4.7e-62 241.5 170 71.8
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 1.8e-61 239.6 170 71.2
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 2.0e-57 226.1 169 70.4
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 6.1e-54 214.5 170 64.7
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 5.4e-50 201.4 173 61.3
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 8.0e-46 187.6 171 57.3
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 1.4e-45 186.8 170 59.4
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 4.0e-45 185.3 172 57.0
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 6.8e-45 184.5 173 57.2
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 1.5e-44 183.3 173 56.1
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 3.4e-44 182.2 172 56.4
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 4.4e-44 181.8 172 55.8
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 1.7e-43 179.9 170 56.5
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 2.2e-43 179.5 177 55.4
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 3.7e-43 178.7 164 55.5
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 1.4e-42 176.8 183 53.6
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 5.4e-42 174.9 174 55.7
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 5.4e-42 174.9 171 53.2
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 7.0e-42 174.5 169 53.3
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 1.2e-41 173.7 171 55.0
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 2.7e-41 172.6 173 53.2
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 6.0e-41 171.4 173 54.3
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 7.8e-41 171.0 167 53.9
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 1.0e-40 170.6 175 53.1
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 1.3e-40 170.2 174 51.1
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.3e-40 170.2 173 52.6
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 1.3e-40 170.2 176 51.1
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 1.7e-40 169.9 176 51.1
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 6.6e-40 167.9 167 53.3
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 6.6e-40 167.9 167 53.3
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 8.6e-40 167.5 170 52.4
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 1.1e-39 167.2 178 52.8
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 1.6e-38 163.3 173 50.3
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 6.2e-38 161.4 167 52.7
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 8.1e-38 161.0 177 53.1
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.3e-37 159.5 177 52.0
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.3e-37 159.5 177 52.5
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 2.3e-37 159.5 177 48.0
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 5.2e-37 158.3 161 52.2
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 6.8e-37 157.9 179 49.2
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 1.5e-36 156.8 171 46.8
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 3.4e-36 155.6 173 49.1
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 7.5e-36 154.5 171 47.4
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 7.5e-36 154.5 171 48.0
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 9.8e-36 154.1 168 50.0
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 9.8e-36 154.1 168 50.0
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 1.3e-35 153.7 179 45.8
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 1.3e-35 153.7 172 46.5
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 2.9e-35 152.5 173 46.8
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 4.9e-35 151.8 168 49.4
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 4.9e-35 151.8 168 49.4
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 4.9e-35 151.8 168 49.4
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 4.9e-35 151.8 171 47.4
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 6.4e-35 151.4 171 47.4
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 1.1e-34 150.6 168 48.2
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 1.9e-34 149.8 168 48.8
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 2.4e-34 149.4 172 46.5
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 2.4e-34 149.4 174 46.6
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 2.4e-34 149.4 174 44.8
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 3.2e-34 149.1 171 46.2
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.2e-33 147.1 172 47.1
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 2.7e-33 146.0 170 45.9
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 4.6e-33 145.2 172 46.5
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 6.0e-33 144.8 171 45.0
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 3.9e-32 142.1 172 44.8
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 1.5e-31 140.2 171 45.0
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 2.5e-31 139.4 177 43.5
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 9.5e-31 137.5 157 47.1
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 9.5e-31 137.5 179 43.0
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 1.2e-30 137.1 157 47.1
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 8.1e-30 134.4 170 43.5
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 2.3e-29 132.9 170 45.9
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 4.0e-29 132.1 170 42.4
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 3.4e-28 129.0 167 43.7
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 1.3e-27 127.1 166 44.6
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 2.9e-27 125.9 167 40.7
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 3.8e-27 125.6 160 43.1
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 7.1e-26 121.3 171 42.7
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 9.2e-26 120.9 142 46.5
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 2.1e-25 119.8 128 49.2
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 2.3e-24 116.3 167 41.9
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 3.0e-24 115.9 144 44.4
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 3.9e-24 115.5 169 39.6
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 8.6e-24 114.4 171 39.2
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 1.1e-23 114.0 141 39.0
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 1.1e-23 114.0 171 38.6
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 4.3e-23 112.1 172 39.5
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.1e-21 107.5 130 44.6
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 5.4e-18 95.1 148 39.2
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 7.1e-18 94.7 172 36.0
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 3.1e-13 79.3 151 35.1
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 1.3e-11 73.9 127 37.0
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 1.4e-10 70.5 103 35.9
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 3.2e-10 69.3 131 35.1
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.3e-08 63.9 178 28.1
Pp3c3_12780 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.9e-07 60.1 152 27.6
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 2.5e-07 59.7 152 28.3
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 8.1e-06 54.7 63 44.4


User provided reference genes

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