Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 2181.4 1139 100.0
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1887.5 1141 85.6
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1879.8 1142 85.3
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1780.4 1140 81.8
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1697.9 1146 77.1
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1658.3 1142 76.7
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 0.0e+00 1641.3 1089 79.5
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1632.1 1141 73.9
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1617.1 1140 74.7
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1608.2 1138 73.6
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1491.9 1131 68.3
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1476.5 1137 67.7
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1254.2 1161 58.5
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1247.3 1149 58.5
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1245.0 1162 58.1
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1236.1 1163 58.6
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1234.6 1161 57.3
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1221.1 1233 55.2
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1201.0 1154 56.5
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1196.0 1166 57.1
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1189.1 1164 56.7
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1183.7 1154 56.1
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1180.2 1151 55.5
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1164.8 1164 56.2
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1162.5 1152 55.4
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1158.7 1151 55.5
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1155.2 1153 55.6
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1142.1 1152 54.3
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1128.6 1150 54.2
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1127.5 1162 53.8
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1127.1 1157 53.6
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1122.5 1150 53.5
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1113.2 1156 54.4
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1103.6 1140 52.6
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1100.9 1164 51.5
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1095.1 1122 54.0
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1085.5 1161 52.0
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1082.4 1159 52.5
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1081.6 1145 52.7
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 1.6e-311 1072.8 1152 51.5
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 5.9e-310 1067.8 1214 49.3
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 8.5e-309 1063.9 1153 49.8
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.9e-308 1062.8 1153 50.0
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 2.6e-305 1052.4 1153 49.9
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 5.9e-302 1041.2 1169 49.2
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.0e-301 1040.4 1068 53.7
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 1.5e-297 1026.5 1100 51.9
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.5e-297 1026.5 1152 51.0
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 3.1e-295 1018.8 1118 51.0
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.3e-293 1013.4 1153 49.5
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 2.4e-287 992.6 1102 49.9
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 3.1e-287 992.3 1160 48.7
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 4.5e-286 988.4 1158 48.8
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 7.8e-286 987.6 1147 48.6
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.4e-282 976.9 1147 48.1
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 1.2e-281 973.8 1158 47.8
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.9e-280 969.1 1151 47.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 3.2e-279 965.7 1156 47.8
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 9.5e-276 954.1 1150 46.8
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.2e-275 953.7 1155 46.8
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 4.7e-275 951.8 1144 47.4
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 1.4e-274 950.3 1148 46.9
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 3.1e-274 949.1 1156 46.5
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 3.1e-274 949.1 1144 47.4
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 2.0e-273 946.4 1123 48.3
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 5.8e-273 944.9 1151 46.1
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 1.3e-272 943.7 1151 46.1
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 2.9e-272 942.6 1234 45.9
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 6.4e-272 941.4 1156 46.7
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.9e-271 939.9 1050 51.1
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.2e-270 937.2 1156 46.6
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 1.6e-270 936.8 1157 46.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.0e-270 936.4 1147 46.1
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 4.6e-270 935.3 1157 46.4
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 9.5e-268 927.5 1145 46.4
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 8.1e-267 924.5 1155 45.6
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.7e-262 909.4 1156 45.2
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 3.9e-261 905.6 1007 49.4
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 4.0e-258 895.6 1099 47.2
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 3.4e-257 892.5 1147 45.2
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 9.2e-255 884.4 1038 47.4
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.6e-254 882.1 958 50.8
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.3e-253 879.8 1147 44.8
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 2.0e-249 866.7 1176 42.7
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 1.4e-242 844.0 1136 43.2
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 4.2e-239 832.4 1071 46.1
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 9.6e-236 821.2 1149 43.2
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 7.4e-228 795.0 1051 44.5
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.4e-226 790.0 1150 41.2
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 2.5e-223 780.0 1150 39.7
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.2e-222 777.7 1160 39.5
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 2.3e-221 773.5 1148 41.1
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.3e-219 767.7 943 47.1
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 2.2e-208 730.3 912 44.6
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.7e-152 544.7 1051 35.5
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 3.9e-136 490.3 1206 30.6
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 6.6e-128 463.0 647 41.6
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 1.5e-127 461.8 1202 29.0
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.1e-118 431.4 457 53.4
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.1e-110 404.8 711 36.3
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 8.2e-110 402.9 518 44.0
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.9e-104 384.0 535 41.5
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 6.7e-104 383.3 1141 27.8
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.4e-101 374.8 439 49.4
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.1e-101 374.4 441 49.0
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.6e-97 360.9 335 55.8
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.9e-84 317.0 446 44.6
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.2e-81 309.3 236 66.5
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 6.3e-70 270.4 1301 24.4
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.7e-67 262.3 238 56.3
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 7.0e-61 240.4 401 40.1
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.0e-60 238.8 199 63.3
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 9.5e-58 229.9 315 46.3
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.2e-57 229.6 251 53.8
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.2e-57 229.6 186 68.8
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 7.5e-55 220.3 154 68.8
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 5.6e-50 204.1 180 58.9
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.3e-46 193.0 138 76.1
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 6.4e-46 190.7 184 56.5
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.8e-40 172.6 228 45.6
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.6e-36 159.5 93 86.0
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.0e-36 157.5 151 51.7
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 5.2e-32 144.4 96 82.3
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.0e-31 142.5 116 60.3
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 3.2e-29 135.2 144 51.4
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.7e-27 129.4 179 44.1
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.6e-26 124.4 96 65.6
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.6e-26 124.4 96 65.6
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.6e-26 124.4 178 38.2
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 1.6e-25 122.9 100 63.0
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 6.2e-25 120.9 122 51.6
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.1e-24 120.2 118 49.2
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.7e-22 112.8 120 50.8
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 2.2e-22 112.5 357 26.3
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 2.9e-22 112.1 151 43.7
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 2.9e-22 112.1 151 43.7
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 2.7e-20 105.5 66 81.8
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 7.8e-20 104.0 257 31.1
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 3.0e-19 102.1 65 80.0
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 7.3e-18 97.4 127 44.9
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 2.8e-17 95.5 80 61.2
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.8e-16 92.8 143 43.4
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 4.0e-16 91.7 174 33.3
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 1.9e-13 82.8 62 53.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 3.2e-13 82.0 90 43.3
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 2.1e-12 79.3 53 73.6
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 1.1e-10 73.6 79 43.0
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 4.8e-09 68.2 98 41.8
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 8.1e-09 67.4 64 50.0
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.4e-08 65.9 68 47.1
TPR.G7163 Trifolium pratense HOM05D002451 ORTHO05D005601 7.6e-07 60.8 35 74.3


User provided reference genes

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