Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01147_v3 Cicer arietinum L. HOM05D008100 ORTHO05D012481 3.1e-20 104.0 47 100.0
Ca_18083_v3 Cicer arietinum L. HOM05D000162 ORTHO05D000090 1.5e-14 85.1 41 95.1
Medtr4g107180 Medicago truncatula HOM05D010072 ORTHO05D000090 3.4e-11 73.9 47 63.8
Medtr6g079960 Medicago truncatula HOM05D008100 ORTHO05D009715 1.4e-09 68.6 38 76.3
Medtr7g095300 Medicago truncatula HOM05D000162 ORTHO05D000090 3.2e-09 67.4 47 61.7
Medtr6g072030 Medicago truncatula HOM05D027749 ORTHO05D048960 4.2e-09 67.0 47 59.6
BolC8t52279H Brassica oleracea HOM05D000162 ORTHO05D000090 5.4e-09 66.6 47 63.8
CiPaw.08G119600 Carya illinoinensis HOM05D000162 ORTHO05D000090 1.2e-08 65.5 45 53.3
QL04p064912 Quercus lobata HOM05D000162 ORTHO05D000090 2.1e-08 64.7 45 57.8
Psat2g130520 Pisum sativum HOM05D008100 ORTHO05D009715 4.6e-08 63.5 36 80.6
arahy.Tifrunner.gnm1.ann1.P9T7FJ Arachis hypogaea HOM05D000239 ORTHO05D000090 6.0e-08 63.2 47 59.6
A09p62690 Brassica napus HOM05D000162 ORTHO05D000090 6.0e-08 63.2 45 60.0
Phvul.008G249200 Phaseolus vulgaris HOM05D008100 ORTHO05D009715 6.0e-08 63.2 38 76.3
VMungo0331G1525 Vigna mungo HOM05D000162 ORTHO05D000090 1.0e-07 62.4 50 58.0
CiPaw.08G119900 Carya illinoinensis HOM05D000162 ORTHO05D000090 1.3e-07 62.0 44 52.3
Lj1g0012010 Lotus japonicus HOM05D000162 ORTHO05D000090 1.3e-07 62.0 43 65.1
Medtr6g079890 Medicago truncatula HOM05D000162 ORTHO05D000090 1.3e-07 62.0 42 66.7
Haze_21398 Corylus avellana HOM05D000162 ORTHO05D000090 1.7e-07 61.6 45 48.9
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 2.3e-07 61.2 45 55.6
Medtr0051s0090 Medicago truncatula HOM05D008100 ORTHO05D009715 2.3e-07 61.2 38 68.4
Medtr6g078210 Medicago truncatula HOM05D000162 ORTHO05D000090 3.0e-07 60.8 42 66.7
Medtr6g081920 Medicago truncatula HOM05D008100 ORTHO05D000090 3.9e-07 60.5 47 57.4
AT1G12700 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 5.1e-07 60.1 45 57.8
arahy.Tifrunner.gnm1.ann1.BXHN9I Arachis hypogaea HOM05D000162 ORTHO05D000090 5.1e-07 60.1 47 55.3
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 5.1e-07 60.1 45 53.3
QL04p064892 Quercus lobata HOM05D000162 ORTHO05D000090 5.1e-07 60.1 45 55.6
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 6.6e-07 59.7 45 53.3
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 6.6e-07 59.7 45 53.3
Manes.09G016633 Manihot esculenta HOM05D000162 ORTHO05D000090 8.7e-07 59.3 47 51.1
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 8.7e-07 59.3 45 55.6
VMungo0464G0905 Vigna mungo HOM05D008100 ORTHO05D009715 8.7e-07 59.3 35 74.3
MBI11_g34857_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.1e-06 58.9 42 57.1
AL1G23630 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.5e-06 58.5 45 53.3
BcaB08g34233 Brassica carinata HOM05D000162 ORTHO05D000090 1.5e-06 58.5 45 60.0
BolC8t52228H Brassica oleracea HOM05D000162 ORTHO05D000090 1.5e-06 58.5 45 53.3
Glyma.09G176800 Glycine max HOM05D008100 ORTHO05D009715 1.5e-06 58.5 33 78.8
Lsat_1_v5_gn_1_11600 Lactuca sativa HOM05D000162 ORTHO05D000090 1.5e-06 58.5 45 48.9
Lsat_1_v5_gn_1_11620 Lactuca sativa HOM05D000162 ORTHO05D000090 1.5e-06 58.5 45 48.9
AL1G24180 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.9e-06 58.2 45 51.1
arahy.Tifrunner.gnm1.ann1.H82N3I Arachis hypogaea HOM05D000162 ORTHO05D000090 1.9e-06 58.2 47 53.2
arahy.Tifrunner.gnm1.ann1.QV0CY4 Arachis hypogaea HOM05D000162 ORTHO05D000090 1.9e-06 58.2 47 53.2
A08p32720 Brassica napus HOM05D000162 ORTHO05D000090 1.9e-06 58.2 45 53.3
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 1.9e-06 58.2 45 53.3
VMungo0331G1933 Vigna mungo HOM05D000162 ORTHO05D000090 1.9e-06 58.2 31 77.4
Duzib114G0499 Durio zibethinus HOM05D000162 ORTHO05D000090 2.5e-06 57.8 44 56.8
Ca_12398_v3 Cicer arietinum L. HOM05D011211 ORTHO05D012481 3.3e-06 57.4 26 92.3
TPR.G3582 Trifolium pratense HOM05D000162 ORTHO05D000090 3.3e-06 57.4 45 60.0
Gorai.009G377900 Gossypium raimondii HOM05D000162 ORTHO05D000090 4.3e-06 57.0 39 61.5
QL03p014360 Quercus lobata HOM05D000315 ORTHO05D000090 4.3e-06 57.0 45 53.3
A09p63670 Brassica napus HOM05D000162 ORTHO05D000090 5.6e-06 56.6 45 57.8
C08p45770 Brassica napus HOM05D003784 ORTHO05D004345 5.6e-06 56.6 46 54.3
C08p47160 Brassica napus HOM05D000162 ORTHO05D000090 5.6e-06 56.6 45 57.8
BolC8t52131H Brassica oleracea HOM05D003784 ORTHO05D004345 5.6e-06 56.6 46 54.3
BraA09t41715Z Brassica rapa HOM05D000162 ORTHO05D000090 5.6e-06 56.6 45 57.8
Lalb_Chr05g0220111 Lupinus albus HOM05D000162 ORTHO05D000090 5.6e-06 56.6 43 58.1
Thecc.05G192800 Theobroma cacao HOM05D000162 ORTHO05D000090 5.6e-06 56.6 43 53.5
Gorai.009G376400 Gossypium raimondii HOM05D000162 ORTHO05D000090 7.3e-06 56.2 45 51.1
Nn5g28361 Nelumbo nucifera HOM05D000162 ORTHO05D000090 9.6e-06 55.8 45 48.9
QL08p052740 Quercus lobata HOM05D000162 ORTHO05D000090 9.6e-06 55.8 36 63.9


User provided reference genes

Program Settings