Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 2.3e-243 845.1 415 100.0
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 9.9e-215 750.0 431 86.8
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 1.8e-203 712.6 445 80.2
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 4.5e-199 698.0 435 79.1
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 2.9e-198 695.3 440 78.2
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 6.5e-198 694.1 436 78.4
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 4.2e-197 691.4 438 78.5
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 3.7e-193 678.3 445 76.0
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.0e-190 670.2 444 74.5
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 1.3e-190 669.8 434 77.0
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 3.2e-189 665.2 433 76.7
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 2.0e-183 646.0 442 74.0
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 4.2e-181 638.3 438 72.1
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 2.3e-179 632.5 424 74.5
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 3.9e-179 631.7 454 70.9
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 8.8e-179 630.6 449 69.9
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 7.4e-178 627.5 394 76.4
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.2e-177 625.9 381 76.9
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 3.7e-177 625.2 393 77.4
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 4.8e-177 624.8 412 73.1
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 8.2e-177 624.0 383 77.3
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 6.9e-176 620.9 384 77.9
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.5e-175 619.8 419 71.6
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 1.7e-174 616.3 446 70.6
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.7e-174 616.3 410 72.4
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 2.2e-174 615.9 408 74.3
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 2.2e-174 615.9 417 71.7
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 5.0e-174 614.8 410 72.4
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 1.4e-173 613.2 470 67.4
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 1.6e-172 609.8 358 78.8
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.6e-172 609.8 415 72.0
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 2.1e-172 609.4 354 80.2
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 3.6e-172 608.6 444 68.5
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 3.6e-172 608.6 387 75.5
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 6.1e-172 607.8 384 74.0
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 6.1e-172 607.8 383 75.2
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 7.9e-172 607.4 385 74.3
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.0e-171 607.1 398 73.6
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.0e-171 607.1 415 71.1
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 3.0e-171 605.5 392 74.0
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 3.0e-171 605.5 388 75.3
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.9e-171 605.1 416 71.6
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 2.6e-170 602.4 385 73.8
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 3.3e-170 602.1 406 71.4
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 3.3e-170 602.1 375 75.5
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 4.4e-170 601.7 449 67.7
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 7.4e-170 600.9 401 73.3
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 7.4e-170 600.9 419 72.1
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 2.2e-169 599.4 404 72.0
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 2.8e-169 599.0 439 67.4
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 2.8e-169 599.0 411 71.0
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 2.8e-169 599.0 403 73.0
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 2.8e-169 599.0 373 76.1
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 2.8e-169 599.0 371 76.5
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 4.8e-169 598.2 447 66.9
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.1e-168 597.0 385 73.5
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.1e-168 595.5 427 69.8
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 4.1e-168 595.1 386 74.9
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 2.0e-167 592.8 446 66.8
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 3.5e-167 592.0 390 73.8
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 4.5e-167 591.7 415 68.9
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 4.5e-167 591.7 398 71.9
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 5.9e-167 591.3 405 69.6
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 1.3e-166 590.1 348 78.7
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.3e-166 590.1 405 70.6
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.2e-166 589.3 425 69.2
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 2.9e-166 589.0 383 72.1
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 2.9e-166 589.0 424 69.3
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 5.0e-166 588.2 398 71.6
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 6.5e-166 587.8 387 71.8
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 4.2e-165 585.1 388 73.2
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.2e-164 583.6 386 72.3
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 1.6e-164 583.2 397 71.3
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 2.1e-164 582.8 386 72.3
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 2.1e-164 582.8 386 72.3
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 2.7e-164 582.4 406 69.5
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 4.7e-164 581.6 402 69.9
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 8.0e-164 580.9 408 70.3
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 1.0e-163 580.5 386 72.0
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 1.0e-163 580.5 386 72.0
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 1.0e-163 580.5 386 72.0
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 1.0e-163 580.5 399 70.2
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 1.4e-163 580.1 387 72.1
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 1.4e-163 580.1 387 71.8
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.8e-163 579.7 397 70.5
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 2.3e-163 579.3 378 73.0
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-163 579.3 384 71.9
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 4.0e-163 578.6 412 69.7
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 8.8e-163 577.4 383 72.1
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 8.8e-163 577.4 387 71.6
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.5e-162 576.6 393 70.7
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 2.6e-162 575.9 403 69.5
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 3.3e-162 575.5 421 68.2
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 5.7e-162 574.7 394 70.8
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 3.7e-161 572.0 412 68.7
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 3.7e-161 572.0 435 66.0
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 8.2e-161 570.9 411 67.9
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 8.2e-161 570.9 415 68.7
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 3.1e-160 568.9 412 68.2
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 1.2e-159 567.0 408 68.4
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 7.7e-159 564.3 375 70.9
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 2.9e-158 562.4 389 69.2
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 1.1e-157 560.5 389 68.9
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 2.5e-157 559.3 376 70.7
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 7.2e-157 557.8 420 66.9
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 2.1e-156 556.2 349 73.4
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 2.7e-156 555.8 443 63.9
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 3.6e-156 555.4 406 68.5
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.0e-155 553.9 432 65.0
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 5.2e-155 551.6 381 68.2
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 3.4e-154 548.9 369 70.5
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 8.3e-153 544.3 320 79.4
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.0e-151 539.7 351 72.6
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 4.5e-151 538.5 342 71.9
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 1.0e-150 537.3 339 75.5
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.8e-147 526.6 376 66.0
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 8.8e-147 524.2 351 70.7
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 4.9e-145 518.5 337 70.6
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 2.0e-138 496.5 269 89.2
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 2.0e-135 486.5 393 62.8
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 4.6e-135 485.3 352 65.6
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 3.6e-132 475.7 330 70.9
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.0e-130 469.9 343 65.9
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 8.3e-129 464.5 330 65.2
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 1.9e-128 463.4 284 75.7
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 8.6e-126 454.5 342 64.3
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.1e-120 437.6 337 60.5
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.7e-119 433.0 311 65.9
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 9.5e-117 424.5 334 58.4
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 4.0e-115 419.1 247 78.5
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 6.8e-115 418.3 336 56.2
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 6.4e-113 411.8 331 56.2
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 3.9e-110 402.5 331 54.4
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 2.1e-95 353.6 333 58.0
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 9.0e-91 338.2 330 47.9
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.0e-90 337.0 281 63.3
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 5.5e-80 302.4 339 44.0
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 6.0e-79 298.9 326 47.2
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 1.2e-63 248.1 145 80.7
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 2.0e-61 240.7 198 64.6
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 6.7e-54 215.7 125 77.6
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.7e-37 159.5 243 40.7
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 5.7e-37 159.5 164 43.9
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 2.8e-36 157.1 164 43.3
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.2e-34 151.8 284 34.9
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 2.5e-32 144.1 81 81.5
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.5e-29 134.8 91 72.5
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 5.6e-24 116.3 70 65.7
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 3.7e-20 103.6 63 74.6
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 2.0e-18 97.8 91 48.4
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 3.9e-09 67.0 52 50.0
Nn3g18662 Nelumbo nucifera HOM05D004738 ORTHO05D273315 1.8e-06 58.2 44 59.1
Glyma.15G221066 Glycine max HOM05D004738 ORTHO05D212055 6.8e-06 56.2 27 88.9


User provided reference genes

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