Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 0.0e+00 1333.9 686 100.0
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 0.0e+00 1088.9 721 81.6
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 3.6e-310 1067.8 747 77.9
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 7.7e-289 996.9 737 72.7
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 6.5e-280 967.2 768 70.4
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.5e-279 966.1 691 74.8
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 3.7e-275 951.4 716 72.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 7.0e-266 920.6 751 68.8
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 1.8e-253 879.4 616 74.7
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 7.0e-250 867.5 743 66.5
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 2.5e-247 859.0 702 67.4
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 2.3e-232 809.3 688 63.5
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.9e-231 806.2 746 61.3
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.1e-230 802.7 710 64.9
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 2.8e-230 802.4 690 62.6
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 4.7e-230 801.6 711 62.2
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 4.4e-228 795.0 729 61.7
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 2.2e-227 792.7 710 62.3
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 2.4e-226 789.3 741 61.3
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.7e-225 785.8 740 60.1
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.7e-224 783.1 709 61.6
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.3e-224 782.7 703 62.3
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 8.7e-224 780.8 711 60.8
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.5e-223 780.0 730 61.2
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.1e-222 776.2 709 61.6
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 9.0e-221 770.8 706 61.3
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 3.4e-220 768.8 735 59.0
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 4.5e-220 768.5 710 60.0
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.8e-220 768.1 710 60.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.7e-219 766.5 725 59.7
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.9e-218 763.1 712 59.6
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 7.1e-218 761.1 754 58.9
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-217 760.4 712 59.0
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.3e-216 756.1 764 58.1
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.5e-215 752.7 707 59.1
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 5.6e-215 751.5 764 57.9
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 1.4e-213 746.9 800 54.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.4e-213 746.1 710 62.0
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 5.3e-213 745.0 717 58.9
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 2.2e-211 739.6 691 59.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.9e-211 739.2 744 57.9
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 6.4e-211 738.0 734 57.1
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.4e-210 736.1 698 59.3
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-209 733.8 704 59.1
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 3.5e-209 732.3 709 58.4
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 3.5e-209 732.3 612 65.0
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 3.9e-208 728.8 767 54.6
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.9e-207 726.5 693 59.3
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 3.3e-207 725.7 738 56.4
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 9.6e-207 724.2 738 56.5
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.8e-205 719.9 713 57.1
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 5.8e-204 714.9 690 57.2
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 6.5e-203 711.4 642 59.8
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 1.6e-201 706.8 697 59.0
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 3.0e-200 702.6 786 52.5
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 9.0e-197 691.0 784 51.9
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.0e-196 689.9 736 53.8
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.3e-195 687.2 849 49.6
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.7e-195 686.8 764 53.8
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.8e-195 685.6 849 49.7
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.1e-194 684.1 834 49.8
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.1e-194 684.1 702 54.8
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.2e-193 680.6 786 51.7
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 2.1e-193 679.9 809 51.2
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 2.7e-193 679.5 738 52.2
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.7e-193 679.5 697 55.8
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.0e-192 676.0 774 51.9
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 3.9e-192 675.6 736 54.2
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 3.9e-192 675.6 822 50.1
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 5.1e-192 675.2 756 52.8
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 6.7e-192 674.9 688 56.8
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 4.3e-191 672.2 746 53.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 8.2e-190 667.9 616 57.3
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.4e-189 667.2 812 49.1
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 2.0e-188 663.3 741 52.5
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 4.5e-188 662.1 632 57.3
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 3.8e-187 659.1 723 53.5
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.9e-186 656.8 743 52.5
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.3e-184 649.8 752 49.7
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 2.3e-184 649.8 750 52.9
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 5.1e-184 648.7 649 54.4
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 9.7e-183 644.4 702 54.1
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.8e-182 642.9 791 48.8
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 8.2e-182 641.3 714 52.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 1.4e-181 640.6 724 53.2
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-181 640.6 700 52.3
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 4.1e-181 639.0 693 53.0
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 1.2e-180 637.5 687 53.3
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.5e-180 637.1 693 54.5
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 2.0e-180 636.7 686 53.2
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 2.9e-179 632.9 690 54.5
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 8.5e-179 631.3 716 51.1
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 5.5e-178 628.6 728 51.4
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 2.3e-176 623.2 729 50.9
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 3.0e-176 622.9 688 53.1
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.5e-175 620.5 687 52.7
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 2.6e-175 619.8 688 52.8
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 3.3e-175 619.4 738 50.3
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 7.4e-175 618.2 704 50.7
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.3e-174 617.5 738 50.0
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.7e-174 617.1 687 52.5
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 2.4e-173 613.2 769 48.4
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 3.1e-173 612.8 740 49.1
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-172 610.9 688 52.3
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.0e-171 607.8 697 50.2
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 2.9e-171 606.3 690 52.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.7e-169 599.7 665 51.0
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 6.7e-168 595.1 629 52.0
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.5e-167 594.0 694 51.3
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 7.5e-167 591.7 719 49.1
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.8e-160 570.5 652 51.7
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.1e-157 559.7 448 63.2
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 5.4e-157 558.9 806 43.5
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.1e-154 551.2 783 44.3
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.2e-141 506.5 723 44.0
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 9.2e-141 505.0 653 44.6
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.3e-136 490.3 490 54.7
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.3e-131 474.6 713 41.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.3e-131 473.8 721 41.9
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.9e-130 470.7 462 55.2
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.1e-112 410.2 755 36.7
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.3e-102 378.3 694 38.3
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.7e-97 360.1 710 36.5
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 6.5e-86 322.8 621 36.6
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.4e-86 322.4 479 41.3
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.2e-85 320.1 489 40.5
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-84 318.5 479 40.5
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.1e-80 303.5 300 55.0
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.9e-78 297.4 430 38.4
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-75 288.5 483 37.1
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.4e-75 288.5 483 37.1
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-74 284.3 483 35.8
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.3e-74 283.9 464 39.0
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 7.7e-71 272.7 497 36.6
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.0e-67 262.3 370 46.8
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.3e-62 245.4 386 42.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.0e-58 231.5 596 37.9
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 3.2e-53 214.2 190 53.2
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-40 172.6 204 51.0
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.9e-33 147.1 369 36.3
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 3.1e-27 127.9 71 85.9
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 2.2e-25 121.7 92 56.5
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.3e-14 85.9 163 38.7
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.7e-14 85.5 49 81.6
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 7.3e-13 80.1 80 45.0
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.2e-11 73.9 200 30.5
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 9.9e-10 69.7 53 49.1
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.3e-09 69.3 74 41.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.3e-09 69.3 74 41.9
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 6.4e-09 67.0 53 49.1
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.1e-08 64.3 53 45.3
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.1e-07 62.0 45 68.9


User provided reference genes

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