Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 2.4e-57 225.3 115 100.0
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 2.9e-47 191.8 115 80.9
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 2.1e-45 185.7 115 80.0
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 1.9e-38 162.5 119 73.1
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 5.3e-33 144.4 97 79.4
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 6.5e-31 137.5 95 72.6
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 1.6e-29 132.9 116 62.9
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 2.7e-29 132.1 116 63.8
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 7.9e-29 130.6 114 62.3
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 3.9e-28 128.3 105 63.8
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 6.7e-28 127.5 110 63.6
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 6.7e-28 127.5 110 63.6
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 6.7e-28 127.5 117 59.8
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 1.1e-27 126.7 98 65.3
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.1e-27 126.7 117 57.3
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 1.9e-27 125.9 111 60.4
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.5e-27 125.6 117 56.4
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 2.5e-27 125.6 102 60.8
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 4.3e-27 124.8 100 62.0
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 7.4e-27 124.0 98 63.3
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 9.6e-27 123.6 97 62.9
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 9.6e-27 123.6 103 62.1
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 2.1e-26 122.5 100 62.0
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.1e-26 122.5 117 54.7
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 8.2e-26 120.6 119 52.9
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 1.1e-25 120.2 117 54.7
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 2.4e-25 119.0 102 58.8
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 3.1e-25 118.6 99 61.6
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 3.1e-25 118.6 89 66.3
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 4.1e-25 118.2 90 64.4
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 4.1e-25 118.2 99 60.6
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 4.1e-25 118.2 90 68.9
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 5.3e-25 117.9 97 62.9
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 5.3e-25 117.9 95 58.9
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 6.9e-25 117.5 94 60.6
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 6.9e-25 117.5 99 59.6
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 9.0e-25 117.1 93 62.4
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 1.2e-24 116.7 90 63.3
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 1.2e-24 116.7 99 58.6
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.5e-24 116.3 98 58.2
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.5e-24 116.3 105 55.2
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 2.0e-24 115.9 117 53.0
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 3.4e-24 115.2 113 55.8
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 4.5e-24 114.8 102 53.9
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 5.9e-24 114.4 93 62.4
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 5.9e-24 114.4 98 61.2
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 1.0e-23 113.6 109 53.2
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 1.3e-23 113.2 102 56.9
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 1.3e-23 113.2 103 56.3
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 1.7e-23 112.8 92 60.9
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.7e-23 112.8 97 55.7
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.0e-23 111.3 101 56.4
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 5.0e-23 111.3 96 57.3
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 5.0e-23 111.3 93 58.1
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 1.4e-22 109.8 103 55.3
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 1.4e-22 109.8 97 54.6
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.5e-22 109.0 101 54.5
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 3.2e-22 108.6 94 60.6
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 7.2e-22 107.5 98 58.2
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 1.6e-21 106.3 103 51.5
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 1.6e-21 106.3 103 52.4
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 2.1e-21 105.9 88 56.8
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 4.6e-21 104.8 100 54.0
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 7.9e-21 104.0 104 51.0
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.0e-20 103.6 100 53.0
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 1.8e-20 102.8 108 48.1
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 5.1e-20 101.3 104 51.0
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.1e-19 100.1 88 58.0
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 2.5e-19 99.0 95 49.5
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 3.3e-19 98.6 100 49.0
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 7.4e-19 97.4 89 57.3
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 1.3e-18 96.7 98 54.1
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 1.6e-18 96.3 97 50.5
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 2.2e-18 95.9 91 52.7
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 2.2e-18 95.9 86 54.7
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 2.8e-18 95.5 97 48.5
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.8e-17 92.8 99 52.5
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 6.9e-17 90.9 88 51.1
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 9.0e-17 90.5 96 47.9
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.5e-16 89.7 99 46.5
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 7.7e-16 87.4 91 48.4
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 3.2e-14 82.0 65 61.5
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 2.7e-13 79.0 99 41.4
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 6.1e-13 77.8 86 50.0
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 5.1e-12 74.7 82 48.8
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 5.7e-11 71.2 104 47.1
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 1.7e-10 69.7 81 45.7
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 6.5e-07 57.8 57 52.6


User provided reference genes

Program Settings