Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 2.2e-116 422.5 255 100.0
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 3.5e-61 239.2 269 62.8
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 1.7e-52 210.3 265 53.6
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 6.2e-50 201.8 122 74.6
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 2.6e-48 196.4 127 73.2
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 3.4e-48 196.1 123 72.4
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 4.4e-48 195.7 119 73.1
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 4.4e-48 195.7 121 76.0
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 4.4e-48 195.7 141 66.7
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 4.4e-48 195.7 126 72.2
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 4.4e-48 195.7 142 66.9
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 7.6e-48 194.9 127 72.4
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 9.9e-48 194.5 158 62.0
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 1.3e-47 194.1 128 69.5
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 1.3e-47 194.1 125 68.8
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 2.2e-47 193.4 119 76.5
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 3.7e-47 192.6 161 60.2
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 4.9e-47 192.2 128 68.8
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 6.4e-47 191.8 191 53.9
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 8.3e-47 191.4 184 53.8
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 1.9e-46 190.3 121 73.6
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 2.4e-46 189.9 118 69.5
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 5.4e-46 188.7 123 72.4
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 7.1e-46 188.3 117 70.1
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 9.2e-46 188.0 136 66.2
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 1.6e-45 187.2 125 69.6
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 1.6e-45 187.2 130 66.9
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 3.5e-45 186.0 119 72.3
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 6.0e-45 185.3 124 71.0
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 7.8e-45 184.9 153 60.8
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 7.8e-45 184.9 147 60.5
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.0e-44 184.5 137 65.0
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 1.0e-44 184.5 136 65.4
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 1.3e-44 184.1 123 69.9
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 1.3e-44 184.1 221 45.7
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 3.9e-44 182.6 132 65.9
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 5.1e-44 182.2 211 46.0
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 8.6e-44 181.4 125 68.0
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 1.1e-43 181.0 204 48.5
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 1.1e-43 181.0 200 60.0
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 1.9e-43 180.3 126 68.3
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 4.3e-43 179.1 236 41.5
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 4.3e-43 179.1 124 71.0
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 4.3e-43 179.1 127 67.7
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 5.6e-43 178.7 136 61.0
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 5.6e-43 178.7 136 61.0
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 5.6e-43 178.7 136 61.0
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.3e-43 178.3 122 68.0
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.2e-42 177.6 122 68.9
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.2e-42 177.6 121 68.6
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 1.6e-42 177.2 117 71.8
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 2.1e-42 176.8 120 69.2
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 2.8e-42 176.4 132 62.1
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 6.2e-42 175.3 114 70.2
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 6.2e-42 175.3 120 68.3
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 2.4e-41 173.3 224 50.0
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 3.1e-41 172.9 131 61.1
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 4.0e-41 172.6 134 60.4
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 4.0e-41 172.6 155 56.8
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 4.0e-41 172.6 227 49.3
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 5.2e-41 172.2 138 60.1
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 6.8e-41 171.8 119 70.6
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 6.8e-41 171.8 121 68.6
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 1.2e-40 171.0 108 75.0
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 5.8e-40 168.7 123 63.4
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 7.6e-40 168.3 131 61.8
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 1.3e-39 167.5 131 60.3
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 1.7e-39 167.2 119 68.9
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 6.4e-39 165.2 133 58.6
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 8.4e-39 164.9 131 60.3
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 8.4e-39 164.9 134 57.5
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 1.1e-38 164.5 117 65.0
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 1.2e-37 161.0 119 63.9
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 1.6e-37 160.6 125 61.6
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 2.1e-37 160.2 116 69.0
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 3.9e-36 156.0 112 64.3
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 1.5e-35 154.1 118 61.0
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 2.5e-35 153.3 104 67.3
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 6.2e-34 148.7 125 56.8
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 3.1e-33 146.4 187 67.4
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 4.0e-33 146.0 114 58.8
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 1.2e-32 144.4 140 52.1
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 1.7e-31 140.6 127 53.5
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 7.9e-29 131.7 121 52.9
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.1e-27 127.9 104 58.7
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.5e-27 126.7 120 51.7
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 8.1e-26 121.7 122 49.2
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 3.1e-25 119.8 94 60.6
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 9.0e-25 118.2 161 41.0
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 1.2e-24 117.9 128 43.0
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 6.4e-23 112.1 105 51.4
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 1.2e-21 107.8 116 49.1
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.1e-21 107.1 107 46.7
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 3.5e-21 106.3 120 46.7
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.1e-10 70.5 46 67.4
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 6.3e-10 68.9 40 72.5
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 8.2e-10 68.6 48 64.6
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.1e-06 58.2 48 58.3
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.4e-06 57.8 53 52.8


User provided reference genes

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