Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 4.3e-96 354.8 191 100.0
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 2.7e-90 335.5 191 93.7
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 6.0e-90 334.3 190 93.7
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.1e-88 330.1 191 93.2
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.3e-84 316.6 185 90.3
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.4e-83 312.4 191 86.9
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 7.1e-83 310.8 191 86.4
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 7.1e-83 310.8 191 86.4
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.1e-82 309.3 182 89.0
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.6e-82 308.1 191 86.9
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 7.8e-82 307.4 190 86.8
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.0e-81 307.0 184 87.5
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 2.3e-81 305.8 190 86.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 6.6e-81 304.3 184 85.9
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.1e-80 303.5 180 87.8
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 1.9e-80 302.8 182 86.3
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 2.5e-80 302.4 194 83.0
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 4.3e-80 301.6 184 84.2
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 7.3e-80 300.8 189 85.2
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 7.3e-80 300.8 186 83.9
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 9.6e-80 300.4 184 86.4
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 9.6e-80 300.4 188 84.6
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 9.6e-80 300.4 182 87.9
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.2e-79 300.1 185 85.4
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 2.1e-79 299.3 183 85.8
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.1e-79 299.3 187 85.6
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 2.1e-79 299.3 185 83.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 8.1e-79 297.4 186 82.8
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 8.1e-79 297.4 183 85.8
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 8.1e-79 297.4 183 85.8
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 8.1e-79 297.4 190 83.7
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.1e-78 297.0 195 81.0
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.8e-78 296.2 195 81.0
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 1.8e-78 296.2 195 81.0
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.4e-78 295.8 184 82.6
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 2.4e-78 295.8 186 82.3
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 3.1e-78 295.4 188 83.5
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 3.1e-78 295.4 185 83.8
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 4.0e-78 295.0 194 80.9
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 4.0e-78 295.0 197 81.2
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 6.9e-78 294.3 184 83.7
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 6.9e-78 294.3 188 83.5
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 8.9e-78 293.9 186 81.7
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 8.9e-78 293.9 187 82.4
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.0e-77 292.7 173 87.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.0e-77 292.7 185 82.7
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.6e-77 292.4 184 83.7
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 4.4e-77 291.6 183 83.6
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 7.6e-77 290.8 195 79.5
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 7.6e-77 290.8 181 82.9
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 1.3e-76 290.0 184 82.1
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.3e-76 290.0 191 79.6
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 2.9e-76 288.9 184 81.5
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 3.8e-76 288.5 188 80.3
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 3.8e-76 288.5 180 83.9
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 4.9e-76 288.1 187 80.2
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 6.4e-76 287.7 180 84.4
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 6.4e-76 287.7 184 81.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.4e-76 287.7 187 82.9
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 8.4e-76 287.3 184 80.4
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.1e-75 287.0 185 80.5
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.1e-75 287.0 185 80.5
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 1.4e-75 286.6 186 81.2
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.4e-75 286.6 188 81.9
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.4e-75 285.8 177 83.1
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 3.2e-75 285.4 199 77.9
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.2e-75 285.4 190 77.4
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.2e-75 285.4 173 84.4
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 3.2e-75 285.4 185 79.5
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 4.2e-75 285.0 188 81.4
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 9.3e-75 283.9 190 76.8
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 9.3e-75 283.9 191 79.1
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.6e-74 283.1 205 74.6
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 2.1e-74 282.7 186 81.7
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.5e-74 282.0 190 78.4
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.5e-74 282.0 190 78.4
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 4.6e-74 281.6 226 70.4
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.0e-74 281.2 190 78.4
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 6.0e-74 281.2 178 80.9
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 6.0e-74 281.2 181 81.2
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 7.8e-74 280.8 190 77.9
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.0e-73 280.4 183 80.3
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.0e-73 280.4 186 79.0
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.0e-73 280.4 179 81.6
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.3e-73 280.0 185 78.9
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.3e-73 280.0 185 78.9
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.3e-73 280.0 185 78.9
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.3e-73 280.0 185 78.9
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.7e-73 279.6 183 82.0
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.3e-73 279.3 179 81.6
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.3e-73 279.3 181 79.6
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 3.0e-73 278.9 192 77.6
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.0e-73 278.9 221 71.0
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 5.1e-73 278.1 182 79.1
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 8.7e-73 277.3 184 79.3
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 1.1e-72 276.9 189 78.3
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.1e-72 276.9 193 76.7
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.5e-72 276.6 176 81.8
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.5e-72 275.8 177 78.5
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.5e-72 275.8 195 76.4
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 5.6e-72 274.6 181 78.5
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 7.3e-72 274.2 230 68.3
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.3e-72 274.2 176 81.2
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 7.3e-72 274.2 193 76.2
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 2.1e-71 272.7 185 78.4
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.4e-70 270.0 174 79.3
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.8e-70 269.6 183 74.3
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 2.9e-68 262.3 228 65.4
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 5.4e-67 258.1 159 85.5
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 2.7e-66 255.8 154 87.0
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.0e-65 253.8 250 59.2
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.3e-65 253.4 145 92.4
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.8e-65 253.1 186 73.7
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 5.6e-64 248.1 163 79.1
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 6.9e-62 241.1 183 73.2
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.6e-61 239.2 186 66.7
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.9e-60 235.0 187 71.7
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 9.3e-59 230.7 178 68.0
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.3e-57 226.9 176 66.5
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 8.7e-57 224.2 130 90.8
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 5.6e-56 221.5 131 88.5
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 2.1e-55 219.5 137 82.5
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 7.6e-53 211.1 134 82.8
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 2.2e-52 209.5 173 59.5
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 3.8e-52 208.8 172 64.0
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 5.5e-51 204.9 131 83.2
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.6e-50 203.4 138 78.3
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.3e-49 199.5 128 82.8
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 8.7e-49 197.6 125 79.2
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.9e-48 196.4 204 58.8
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-47 193.4 125 80.8
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.3e-44 183.7 131 73.3
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 2.5e-43 179.5 110 85.5
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-37 160.6 109 78.0
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.4e-37 159.1 113 74.3
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.9e-37 158.3 102 78.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 5.9e-37 158.3 95 84.2
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 5.0e-36 155.2 98 83.7
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 3.2e-35 152.5 86 93.0
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 3.6e-34 149.1 171 46.8
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 7.4e-32 141.4 167 44.9
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 9.7e-32 141.0 93 77.4
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.3e-31 140.6 92 82.6
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 8.2e-31 137.9 171 42.7
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 5.3e-30 135.2 102 71.6
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.8e-28 129.0 81 82.7
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 1.4e-27 127.1 179 38.0
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.1e-26 123.2 95 70.5
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 4.7e-26 122.1 75 84.0
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 3.9e-25 119.0 93 62.4
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 8.8e-25 117.9 104 65.4
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 2.0e-24 116.7 101 65.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 3.6e-18 95.9 63 79.4
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.2e-15 84.7 58 74.1
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 4.5e-13 79.0 63 68.3
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.0e-12 77.8 46 80.4
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.5e-12 74.7 111 47.7
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.9e-11 73.6 111 46.8
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.9e-11 73.6 111 46.8
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.2e-11 71.6 111 45.9
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.4e-11 71.2 111 45.9
Nn4g25553 Nelumbo nucifera HOM05D004325 ORTHO05D049290 3.1e-06 56.2 39 69.2
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 3.1e-06 56.2 113 38.9
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.1e-06 55.8 36 80.6


User provided reference genes

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