Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00963_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 8.1e-42 173.3 88 100.0
Psat1g162120 Pisum sativum HOM05D001578 ORTHO05D001207 3.5e-37 157.9 88 93.2
TPR.G33864 Trifolium pratense HOM05D001578 ORTHO05D001207 2.3e-36 155.2 88 89.8
Medtr2g033630 Medicago truncatula HOM05D001578 ORTHO05D001207 6.7e-36 153.7 88 89.8
Phvul.006G119800 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.4e-30 136.0 88 78.4
Glyma.09G033700 Glycine max HOM05D001578 ORTHO05D001207 3.2e-30 134.8 88 76.1
VMungo0540G0744 Vigna mungo HOM05D001578 ORTHO05D001207 5.5e-30 134.0 88 78.4
Glyma.15G138400 Glycine max HOM05D001578 ORTHO05D001207 1.6e-29 132.5 88 75.0
Lalb_Chr15g0089101 Lupinus albus HOM05D001578 ORTHO05D001207 1.0e-28 129.8 84 76.2
Glyma.17G036100 Glycine max HOM05D001578 ORTHO05D001207 3.0e-28 128.3 88 75.0
Lalb_Chr07g0181951 Lupinus albus HOM05D001578 ORTHO05D001207 3.0e-28 128.3 88 75.0
Phvul.003G116900 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.0e-28 128.3 88 75.0
VMungo1215G0592 Vigna mungo HOM05D001578 ORTHO05D001207 5.1e-28 127.5 88 73.9
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 1.1e-27 126.3 88 73.9
Glyma.07G237500 Glycine max HOM05D001578 ORTHO05D001207 1.5e-27 125.9 88 72.7
Lj4g0021583 Lotus japonicus HOM05D001578 ORTHO05D001207 2.5e-27 125.2 88 71.6
TPR.G25390 Trifolium pratense HOM05D001578 ORTHO05D001207 5.6e-27 124.0 88 71.6
Medtr4g122740 Medicago truncatula HOM05D001578 ORTHO05D001207 1.3e-26 122.9 88 71.6
Psat0s740g0040 Pisum sativum HOM05D001578 ORTHO05D001207 2.1e-26 122.1 88 70.5
Ca_21411_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 3.7e-26 121.3 88 69.3
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 3.4e-24 114.8 85 72.9
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 6.1e-21 104.0 88 61.4
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 1.8e-20 102.4 88 58.0
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 3.0e-20 101.7 86 59.3
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 3.0e-20 101.7 86 59.3
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 3.0e-20 101.7 88 60.2
Medtr4g122720 Medicago truncatula HOM05D001578 ORTHO05D001207 6.7e-20 100.5 88 54.5
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 8.7e-20 100.1 88 59.1
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 8.7e-20 100.1 88 59.1
CiPaw.01G136000 Carya illinoinensis HOM05D001578 ORTHO05D001207 9.7e-19 96.7 88 55.7
PGR031G1824 Punica granatum HOM05D001578 ORTHO05D001207 9.7e-19 96.7 86 55.8
Ciclev10006032m.g Citrus clementina HOM05D001578 ORTHO05D001207 1.3e-18 96.3 86 54.7
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 1.6e-18 95.9 87 55.2
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 3.7e-18 94.7 87 55.2
Sabra08G0077400 Salix brachista HOM05D001578 ORTHO05D001207 6.3e-18 94.0 87 56.3
TPR.G25409 Trifolium pratense HOM05D001578 ORTHO05D001207 6.3e-18 94.0 88 51.1
CANSAT78G0727 Cannabis sativa HOM05D001578 ORTHO05D001207 3.1e-17 91.7 86 52.3
Manes.15G002000 Manihot esculenta HOM05D001578 ORTHO05D001207 3.1e-17 91.7 88 55.7
Gohir.A01G035200 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.1e-17 91.3 88 55.7
Gohir.D01G023565 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.1e-17 91.3 88 55.7
Gorai.002G031100 Gossypium raimondii HOM05D001578 ORTHO05D001207 4.1e-17 91.3 88 55.7
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 6.9e-17 90.5 87 57.5
Atru.chr4.3054 Acer truncatum HOM05D001578 ORTHO05D001207 9.0e-17 90.1 87 52.9
Medtr4g122718 Medicago truncatula HOM05D001578 ORTHO05D001207 9.0e-17 90.1 88 48.9
Potri.008G102600 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.2e-16 89.7 87 54.0
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 1.2e-16 89.7 88 54.5
PGR004G2339 Punica granatum HOM05D001578 ORTHO05D001207 2.6e-16 88.6 86 51.2
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 7.7e-16 87.0 85 52.9
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 7.7e-16 87.0 85 52.9
Eucgr.B03967 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.3e-15 86.3 86 54.7
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 2.2e-15 85.5 81 54.3
Eucgr.H04067 Eucalyptus grandis HOM05D001578 ORTHO05D001207 2.9e-15 85.1 84 53.6
MD13G1149800 Malus domestica HOM05D001578 ORTHO05D001207 2.9e-15 85.1 88 53.4
MD16G1150200 Malus domestica HOM05D001578 ORTHO05D001207 2.9e-15 85.1 88 54.5
TWI09G1118 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 5.5e-14 80.9 85 48.2
arahy.Tifrunner.gnm1.ann1.2R90TF Arachis hypogaea HOM05D000961 ORTHO05D001207 1.6e-13 79.3 83 47.0
Manes.03G207000 Manihot esculenta HOM05D001578 ORTHO05D001207 1.6e-13 79.3 85 49.4
Psat4g021720 Pisum sativum HOM05D001578 ORTHO05D001207 2.1e-13 79.0 89 46.1
PGR031G2148 Punica granatum HOM05D001578 ORTHO05D001207 2.7e-13 78.6 84 51.2
CARHR092380 Cardamine hirsuta HOM05D001578 ORTHO05D001207 6.1e-13 77.4 89 46.1
BcaB04g20863 Brassica carinata HOM05D001578 ORTHO05D001207 6.7e-12 73.9 90 43.3
BolC5t33672H Brassica oleracea HOM05D001578 ORTHO05D001207 1.1e-11 73.2 90 45.6
Sabra08G0077500 Salix brachista HOM05D001578 ORTHO05D001207 1.1e-11 73.2 86 46.5
BcaC01g03785 Brassica carinata HOM05D001578 ORTHO05D001207 1.5e-11 72.8 87 42.5
A01p37170 Brassica napus HOM05D001578 ORTHO05D001207 1.5e-11 72.8 90 44.4
C03p48660 Brassica napus HOM05D001578 ORTHO05D001207 1.5e-11 72.8 87 42.5
BolC1t04679H Brassica oleracea HOM05D001578 ORTHO05D001207 1.5e-11 72.8 90 44.4
BraA01t03778Z Brassica rapa HOM05D001578 ORTHO05D001207 1.5e-11 72.8 90 44.4
THA.LOC104820315 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 1.5e-11 72.8 93 43.0
Carub.0003s1687 Capsella rubella HOM05D001578 ORTHO05D001207 2.5e-11 72.0 93 44.1
Thhalv10021610m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 2.5e-11 72.0 89 44.9
BcaB06g25805 Brassica carinata HOM05D001578 ORTHO05D001207 3.3e-11 71.6 90 44.4
A05p32610 Brassica napus HOM05D001578 ORTHO05D001207 3.3e-11 71.6 90 44.4
BraA03t13159Z Brassica rapa HOM05D001578 ORTHO05D001207 3.3e-11 71.6 87 42.5
BraA05t22085Z Brassica rapa HOM05D001578 ORTHO05D001207 3.3e-11 71.6 90 44.4
Sp3g15350 Schrenkiella parvula HOM05D001578 ORTHO05D001207 3.3e-11 71.6 90 43.3
A03p40090 Brassica napus HOM05D001578 ORTHO05D001207 4.3e-11 71.2 87 42.5
BolC3t17144H Brassica oleracea HOM05D001578 ORTHO05D001207 4.3e-11 71.2 95 40.0
BcaB04g18931 Brassica carinata HOM05D001578 ORTHO05D001207 5.7e-11 70.9 87 42.5
BcaC05g28823 Brassica carinata HOM05D001578 ORTHO05D001207 5.7e-11 70.9 90 44.4
C05p49310 Brassica napus HOM05D001578 ORTHO05D001207 5.7e-11 70.9 90 44.4
AT3G17130 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 9.7e-11 70.1 93 41.9
BcaC09g48669 Brassica carinata HOM05D001578 ORTHO05D001207 2.8e-10 68.6 86 43.0
AL3G30110 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 4.8e-10 67.8 92 41.3
C01p47110 Brassica napus HOM05D001578 ORTHO05D001207 6.3e-10 67.4 86 43.0
Aa31LG8G4140 Aethionema arabicum HOM05D001578 ORTHO05D001207 8.2e-10 67.0 87 41.4
Eucgr.B03968 Eucalyptus grandis HOM05D001578 ORTHO05D001207 3.1e-09 65.1 84 41.7
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 1.4e-06 56.2 85 40.0
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 2.5e-06 55.5 85 38.8


User provided reference genes

Program Settings