Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1468.4 756 100.0
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1359.7 756 92.5
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1337.8 756 90.3
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1336.2 756 91.1
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1333.5 756 90.6
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1333.5 756 90.1
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1322.8 756 89.8
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1312.0 756 89.8
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1291.2 753 88.0
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1289.2 753 87.9
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1188.3 747 80.9
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1185.6 747 80.5
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1184.5 758 80.3
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1177.2 747 79.1
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 0.0e+00 1169.1 634 93.8
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1167.1 775 76.8
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1155.2 757 77.3
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1154.8 756 77.4
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1146.7 756 76.6
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1146.3 759 77.5
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1144.4 774 76.2
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1142.9 758 76.8
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1141.7 774 76.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1140.6 746 78.0
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1132.5 762 76.6
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1132.5 758 76.6
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1129.4 756 75.7
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1126.3 759 76.2
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1125.5 756 76.2
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 0.0e+00 1121.7 749 76.9
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1120.1 752 75.4
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1116.3 758 75.1
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1115.1 757 74.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1114.0 758 74.3
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1113.6 751 75.8
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1113.6 756 74.2
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1112.8 758 74.9
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1112.8 758 74.8
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1109.4 747 74.7
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1105.5 751 74.7
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1105.1 759 74.6
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 0.0e+00 1104.0 752 74.7
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1095.9 748 74.6
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1092.4 758 74.3
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 0.0e+00 1088.9 753 72.8
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1087.8 756 73.9
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1086.6 756 72.8
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 0.0e+00 1086.2 782 72.1
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1082.4 756 74.3
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 0.0e+00 1077.4 649 87.2
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 0.0e+00 1075.1 743 73.6
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 5.2e-312 1074.3 756 73.0
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.6e-311 1072.4 750 74.3
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 3.9e-310 1067.8 753 72.5
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.5e-309 1065.8 747 72.0
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.6e-308 1062.4 759 70.5
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.7e-308 1061.2 754 72.1
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 6.2e-308 1060.4 758 72.3
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.6e-303 1045.8 751 70.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.1e-303 1045.4 747 70.5
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.7e-303 1045.0 758 69.7
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.0e-303 1043.9 706 74.6
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.8e-302 1042.3 747 71.2
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 2.3e-302 1042.0 747 71.1
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 5.7e-301 1037.3 758 69.1
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.5e-298 1029.2 747 69.3
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.6e-298 1028.5 754 69.9
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 4.5e-298 1027.7 747 70.3
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 2.7e-295 1018.5 757 68.4
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 2.0e-293 1012.3 755 69.8
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 4.3e-293 1011.1 747 69.1
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 4.3e-293 1011.1 747 69.1
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 5.7e-293 1010.7 756 68.9
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 6.3e-292 1007.3 774 69.5
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.1e-291 1004.6 747 68.7
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 7.7e-290 1000.3 772 66.7
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.0e-289 1000.0 747 68.0
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.7e-289 999.2 747 67.3
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 6.5e-289 997.3 752 68.1
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 6.5e-289 997.3 752 68.1
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.9e-288 995.7 747 68.1
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.9e-288 995.7 747 68.1
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 7.2e-288 993.8 747 68.1
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 7.2e-288 993.8 747 68.1
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.6e-287 992.6 749 68.8
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.7e-287 991.9 749 68.9
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 7.9e-287 990.3 748 68.0
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 2.3e-286 988.8 756 67.7
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 6.7e-286 987.3 747 66.7
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 8.8e-286 986.9 755 66.6
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 8.8e-286 986.9 686 73.8
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 2.8e-284 981.9 755 66.6
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.4e-283 979.5 744 66.4
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.8e-283 979.2 746 68.4
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 6.3e-276 954.1 758 66.1
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 7.7e-274 947.2 751 65.8
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 5.2e-270 934.5 693 69.1
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.6e-269 932.2 749 63.8
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.4e-267 926.4 756 64.6
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 6.3e-260 901.0 656 69.1
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 4.1e-259 898.3 734 63.9
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.2e-253 880.2 749 61.4
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 2.6e-253 879.0 760 60.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.7e-252 875.2 759 61.1
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 4.9e-252 874.8 811 59.1
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 2.4e-251 872.5 748 59.5
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 2.0e-250 869.4 750 61.5
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 2.0e-250 869.4 750 61.5
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 2.3e-249 865.9 754 59.4
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 8.9e-246 854.0 730 61.5
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 2.3e-230 802.7 759 56.1
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.4e-227 793.5 528 75.9
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.4e-222 776.9 730 57.9
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.6e-218 763.5 748 55.1
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.6e-215 752.3 528 72.7
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.1e-214 750.7 533 71.9
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.7e-210 736.1 536 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.1e-206 724.2 755 52.2
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 4.9e-204 715.3 757 51.7
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 4.3e-200 702.2 747 51.1
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.4e-198 696.4 537 68.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.3e-188 664.1 739 49.3
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 2.5e-179 633.3 752 49.2
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.8e-169 600.5 387 80.6
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 4.1e-166 589.3 472 71.4
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 1.3e-156 557.8 601 50.7
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.7e-132 477.6 377 64.5
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.6e-130 471.1 345 68.4
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 7.1e-110 402.5 729 34.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 3.4e-88 330.5 753 29.0
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 8.7e-84 315.8 227 69.6
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 1.9e-83 314.7 835 29.6
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 7.6e-80 302.8 222 70.7
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.0e-72 278.1 519 39.1
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-57 228.8 202 63.9
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.6e-56 224.6 124 93.5
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.5e-55 219.9 212 56.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 1.8e-49 201.8 136 77.9
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 1.0e-44 186.0 102 93.1
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.6e-37 162.2 197 49.7
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.0e-31 142.9 91 76.9
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.2e-29 136.0 92 80.4
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 3.6e-29 134.4 113 61.9
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 4.0e-28 131.0 240 40.0
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 2.8e-26 124.8 109 60.6
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 8.3e-26 123.2 88 68.2
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.7e-24 118.2 231 36.4
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 5.9e-24 117.1 81 76.5
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.3e-23 115.9 218 38.5
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 5.6e-22 110.5 101 60.4
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 2.8e-21 108.2 67 82.1
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 2.9e-18 98.2 56 91.1
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.7e-18 97.8 74 66.2
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 5.4e-17 94.0 55 81.8
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.2e-16 92.8 98 48.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 1.9e-14 85.5 95 43.2
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 1.0e-12 79.7 111 38.7
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 8.9e-12 76.6 117 41.9
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.2e-11 76.3 65 60.0
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 7.5e-11 73.6 65 58.5
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 6.4e-10 70.5 63 58.7
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 8.3e-10 70.1 65 53.8
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 3.3e-06 58.2 57 57.9
FAN18G2207 Fragaria x ananassa HOM05D003545 ORTHO05D004720 7.3e-06 57.0 63 52.4


User provided reference genes

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