Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.7e-196 689.1 331 100.0
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 2.9e-164 582.0 331 85.8
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 2.3e-161 572.4 331 82.8
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 5.0e-161 571.2 329 84.5
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 7.3e-160 567.4 332 83.7
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 1.4e-150 536.6 332 77.4
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.9e-144 516.2 330 76.1
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 2.2e-140 502.7 329 73.6
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.9e-139 499.6 330 73.6
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.9e-139 499.6 330 73.6
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 3.2e-139 498.8 330 73.6
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.5e-136 490.0 330 72.4
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 9.9e-133 477.2 311 74.3
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 9.9e-133 477.2 311 74.3
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 4.3e-128 461.8 332 69.3
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 3.2e-115 419.1 313 64.5
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 2.1e-114 416.4 313 64.9
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 2.7e-114 416.0 315 65.7
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.1e-112 410.6 315 64.4
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.2e-111 404.8 317 60.6
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.1e-110 404.1 312 60.9
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.8e-110 403.3 311 60.8
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 9.0e-110 401.0 314 63.4
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.2e-109 400.6 330 60.9
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 3.4e-109 399.1 331 59.8
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 4.9e-108 395.2 312 60.3
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.9e-107 393.3 312 59.9
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 3.2e-107 392.5 315 64.1
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 5.5e-107 391.7 342 57.9
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 9.3e-107 391.0 317 63.4
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.5e-106 389.0 315 63.8
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 7.9e-106 387.9 287 64.5
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.8e-105 386.7 317 62.8
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 5.1e-105 385.2 302 60.9
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.5e-104 383.6 312 59.9
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.9e-104 383.3 310 63.5
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.9e-104 383.3 314 60.2
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 4.8e-103 378.6 305 60.3
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 6.9e-102 374.8 312 58.3
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.2e-101 374.0 313 56.9
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.2e-101 374.0 322 57.5
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 2.0e-101 373.2 314 57.6
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 5.9e-101 371.7 314 58.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.7e-100 370.2 312 57.7
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 2.2e-100 369.8 310 58.4
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 6.5e-100 368.2 313 56.5
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 2.5e-99 366.3 313 57.2
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 3.2e-99 365.9 308 58.4
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.2e-98 364.0 313 56.5
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.7e-98 362.8 275 61.8
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 3.0e-97 359.4 302 57.9
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 1.5e-96 357.1 312 55.4
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 4.3e-96 355.5 299 58.9
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 5.7e-96 355.1 313 55.3
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 1.3e-95 354.0 319 56.1
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 4.1e-94 349.0 316 56.0
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 9.0e-94 347.8 315 54.6
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.5e-93 347.1 340 54.4
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 7.7e-93 344.7 295 56.3
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.7e-92 343.6 321 53.0
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.7e-92 343.6 305 55.4
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.9e-92 342.8 321 53.6
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.1e-91 340.9 301 57.5
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.4e-91 337.8 312 53.2
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.1e-90 336.7 285 55.8
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 1.0e-89 334.3 365 49.0
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 3.9e-89 332.4 285 55.4
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 3.9e-89 332.4 285 55.4
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 6.7e-89 331.6 295 54.6
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 4.3e-88 328.9 285 55.1
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.7e-87 327.0 314 52.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 2.8e-87 326.2 304 54.9
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.8e-87 326.2 276 59.4
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 3.7e-87 325.9 285 55.1
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.4e-86 323.9 285 54.0
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.1e-86 322.8 286 55.2
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 5.3e-86 322.0 275 55.3
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 2.0e-85 320.1 286 54.5
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.0e-84 317.8 246 64.6
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.3e-84 317.4 301 51.5
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 2.2e-84 316.6 284 53.9
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.9e-84 316.2 285 53.3
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 3.8e-84 315.8 286 54.2
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 6.5e-84 315.1 262 56.9
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 3.6e-82 309.3 277 55.6
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 5.1e-81 305.4 311 50.5
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 8.8e-81 304.7 282 55.3
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.1e-80 304.3 285 53.3
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.1e-80 304.3 297 51.2
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.7e-79 300.4 313 52.1
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.7e-79 300.4 298 48.7
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 4.8e-79 298.9 293 51.9
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.2e-77 294.3 225 62.2
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 1.6e-77 293.9 281 53.4
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 7.7e-77 291.6 225 60.4
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 7.7e-77 291.6 300 49.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.7e-76 290.4 247 54.7
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.9e-75 287.0 285 51.2
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.5e-75 285.4 220 62.7
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 2.7e-74 283.1 316 46.2
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.7e-74 282.3 291 50.2
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 1.0e-73 281.2 229 57.6
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 1.8e-73 280.4 223 60.5
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 4.0e-73 279.3 292 51.7
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.1e-72 277.7 315 46.0
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.1e-70 269.6 315 45.1
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.5e-69 266.2 211 58.3
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 3.5e-69 266.2 291 48.8
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 5.9e-69 265.4 183 69.9
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 4.2e-67 259.2 238 58.0
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.0e-65 253.1 324 42.3
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.4e-64 249.6 223 55.6
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 2.8e-63 246.5 156 75.0
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 3.7e-63 246.1 298 45.0
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 9.1e-62 241.5 290 45.9
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 1.4e-54 217.6 187 57.8
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 3.1e-54 216.5 292 42.1
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.5e-53 213.0 217 47.9
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 2.3e-52 210.3 288 40.3
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.5e-51 206.8 175 60.0
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 3.6e-50 203.0 127 78.0
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 8.0e-50 201.8 191 51.8
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 4.4e-48 196.1 313 36.4
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 2.2e-47 193.7 267 41.9
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 6.4e-47 192.2 209 50.2
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 5.9e-45 185.7 161 57.8
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.1e-43 181.4 162 58.6
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 7.3e-43 178.7 228 48.7
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 8.0e-42 175.3 293 35.8
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 6.8e-41 172.2 128 62.5
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.9e-39 166.8 287 35.9
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 2.4e-38 163.7 118 66.9
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 7.0e-38 162.2 252 40.1
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.5e-35 154.5 107 71.0
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 4.4e-24 116.3 174 36.2
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 3.8e-23 113.2 113 51.3
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 7.1e-22 109.0 201 33.8
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 3.9e-20 103.2 356 26.7
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.1e-17 93.6 108 45.4
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 1.3e-15 88.2 101 42.6
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.7e-15 87.8 127 37.8
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 2.1e-13 80.9 89 42.7
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.5e-13 80.1 112 37.5
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 3.0e-12 77.0 59 54.2
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.1e-11 75.1 57 57.9
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 2.5e-11 73.9 61 62.3
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 2.5e-11 73.9 61 62.3
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 3.3e-11 73.6 195 30.3
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 3.6e-10 70.1 165 30.9
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 5.3e-09 66.2 221 26.2
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 3.4e-08 63.5 244 25.4
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 2.2e-07 60.8 221 24.9
FAN22G2138 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.8e-07 60.1 56 55.4
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 6.4e-07 59.3 220 27.7
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 6.4e-07 59.3 154 27.3
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 1.9e-06 57.8 235 25.1
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.9e-06 57.8 221 26.2
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.4e-06 57.4 220 27.3
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 3.2e-06 57.0 159 26.4
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 4.2e-06 56.6 154 29.2
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 4.2e-06 56.6 201 25.4
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 7.1e-06 55.8 154 27.9
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 7.1e-06 55.8 154 27.9
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 7.1e-06 55.8 154 27.9
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 7.1e-06 55.8 156 27.6
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 7.1e-06 55.8 167 25.1


User provided reference genes

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