Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 3.6e-196 688.3 420 100.0
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 2.5e-125 453.0 411 64.5
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 1.7e-121 440.3 409 64.5
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 2.6e-106 389.8 440 56.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 5.7e-101 372.1 430 52.1
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.2e-98 364.4 424 55.9
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 3.2e-96 356.3 424 54.2
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 6.1e-95 352.1 420 56.0
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 2.6e-85 320.1 417 50.1
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 7.5e-85 318.5 415 52.5
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 2.7e-74 283.5 397 50.6
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 3.5e-74 283.1 414 48.8
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.0e-61 240.7 404 39.4
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 6.4e-60 235.7 403 40.9
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 6.4e-60 235.7 404 41.6
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.7e-58 230.3 402 39.8
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 1.3e-57 228.0 401 38.9
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.7e-57 227.6 406 36.2
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 4.3e-56 223.0 404 37.1
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 5.6e-56 222.6 403 39.2
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.8e-55 220.3 398 37.9
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.8e-55 220.3 333 39.3
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 5.2e-54 216.1 398 37.9
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.0e-53 214.2 400 37.8
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 4.4e-53 213.0 402 36.6
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.4e-53 213.0 403 36.5
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 4.4e-53 213.0 314 42.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 4.9e-52 209.5 414 37.0
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.1e-51 208.4 414 36.5
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.4e-51 208.0 404 34.9
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.4e-51 208.0 406 35.7
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.9e-51 207.6 407 36.9
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.9e-51 207.6 405 37.3
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 2.4e-51 207.2 318 42.1
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.4e-51 207.2 400 35.5
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 3.2e-51 206.8 407 36.9
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 4.1e-51 206.5 404 37.1
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 7.0e-51 205.7 401 36.4
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 2.7e-50 203.8 400 36.2
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.5e-50 203.4 402 37.1
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 4.6e-50 203.0 410 35.4
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 7.8e-50 202.2 402 36.6
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.3e-49 200.7 400 35.0
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 3.9e-49 199.9 407 36.6
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 3.9e-49 199.9 398 35.4
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 8.6e-49 198.7 408 37.0
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 8.6e-49 198.7 399 36.1
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.5e-48 197.2 400 35.8
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 4.3e-48 196.4 400 37.5
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.3e-48 196.4 322 37.3
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 1.6e-47 194.5 401 35.4
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 2.1e-47 194.1 401 36.9
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 2.1e-47 194.1 312 41.3
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.1e-47 194.1 413 32.7
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.7e-47 193.0 417 35.3
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.3e-46 190.7 405 35.3
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 2.3e-46 190.7 428 34.6
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 8.9e-46 188.7 404 34.7
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.2e-45 188.3 401 34.7
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.5e-45 185.7 317 39.1
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 2.9e-44 183.7 428 33.9
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 4.9e-44 183.0 428 34.6
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.9e-43 181.0 405 34.6
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.9e-43 181.0 406 34.7
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 2.7e-42 177.2 420 33.6
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 7.8e-42 175.6 405 36.0
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.7e-41 174.5 403 33.5
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.3e-40 170.2 325 35.7
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 4.3e-40 169.9 401 33.9
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 5.6e-40 169.5 408 32.4
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 9.5e-40 168.7 310 39.4
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.6e-39 167.9 402 34.3
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 2.8e-39 167.2 403 31.8
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 3.6e-39 166.8 231 42.9
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 4.0e-38 163.3 406 34.5
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.2e-38 162.9 407 33.4
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 6.8e-38 162.5 320 35.9
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.2e-37 161.8 405 33.6
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 2.0e-37 161.0 402 31.8
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 5.8e-37 159.5 326 36.5
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 5.8e-37 159.5 404 32.9
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 7.6e-37 159.1 404 31.4
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.3e-36 158.3 403 32.0
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.9e-36 157.1 313 33.9
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 1.9e-35 154.5 258 39.1
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 3.2e-35 153.7 404 31.7
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 9.2e-35 152.1 325 37.2
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 1.2e-34 151.8 401 33.4
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.6e-34 151.4 404 31.9
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 7.8e-34 149.1 413 31.7
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 1.3e-33 148.3 409 30.1
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.3e-33 148.3 396 30.3
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 3.9e-33 146.7 311 34.1
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.5e-32 144.8 403 32.5
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.5e-32 144.1 277 35.4
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 2.1e-31 141.0 307 37.1
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 2.8e-31 140.6 323 35.3
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 1.8e-30 137.9 426 28.4
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.8e-30 137.9 303 34.7
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 6.9e-30 136.0 403 31.0
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 9.0e-30 135.6 416 31.7
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.2e-29 135.2 314 36.0
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-29 134.8 403 30.8
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 3.4e-29 133.7 308 31.2
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 4.4e-29 133.3 270 34.8
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 5.8e-29 132.9 426 28.2
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.7e-28 131.3 403 30.5
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.1e-27 128.6 239 33.9
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 3.2e-27 127.1 311 31.8
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 5.4e-27 126.3 406 29.3
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.0e-25 122.1 408 30.1
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.5e-24 117.5 438 27.2
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 5.6e-24 116.3 406 31.0
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.8e-22 111.3 312 29.2
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 4.5e-21 106.7 413 29.5
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 5.8e-21 106.3 175 39.4
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.7e-20 104.8 398 29.1
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 2.2e-20 104.4 281 28.5
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 1.9e-19 101.3 232 32.3
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.2e-19 100.1 194 36.6
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.8e-17 94.7 335 28.7
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 8.7e-17 92.4 204 35.3
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.5e-16 91.7 234 29.9
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 1.9e-16 91.3 235 27.7
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 9.6e-16 89.0 403 29.3
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 2.8e-15 87.4 244 27.5
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 3.7e-15 87.0 155 40.6
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 5.3e-14 83.2 301 25.2
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.2e-13 82.0 228 30.3
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 2.0e-13 81.3 431 26.5
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 2.6e-13 80.9 119 37.0
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 9.9e-13 79.0 204 29.9
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 9.9e-13 79.0 246 25.6
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 2.2e-12 77.8 411 27.5
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 5.5e-11 73.2 245 30.2
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 6.0e-10 69.7 267 28.5
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 3.0e-09 67.4 101 37.6
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.3e-08 63.9 128 35.9
SMO351G0278 Selaginella moellendorffii HOM05D029214 ORTHO05D026603 3.1e-06 57.4 228 26.8
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 5.3e-06 56.6 56 50.0


User provided reference genes

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