Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 0.0e+00 2024.6 1146 100.0
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 0.0e+00 1468.0 1149 76.1
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 0.0e+00 1436.4 1170 72.6
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 2.0e-302 1042.7 851 73.7
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 9.9e-257 891.0 1162 50.3
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 7.9e-254 881.3 1167 50.9
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 2.4e-226 790.0 1165 50.4
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 6.3e-219 765.4 1167 48.4
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 2.3e-213 746.9 1043 48.1
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 6.7e-213 745.3 1195 46.1
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 4.8e-211 739.2 1134 46.0
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 6.3e-211 738.8 1197 45.9
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 3.9e-152 543.5 1106 37.3
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.4e-149 535.0 1234 37.0
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 8.4e-147 525.8 1219 36.8
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.6e-143 513.1 1230 37.0
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 7.9e-137 492.7 1123 35.1
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 3.9e-136 490.3 1093 35.5
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 6.2e-134 483.0 1246 32.8
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.4e-127 459.5 1152 34.1
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.6e-126 458.4 1093 34.5
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.1e-122 445.7 1123 32.8
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 2.1e-121 441.4 1003 35.3
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 3.9e-120 437.2 1107 32.4
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 5.1e-120 436.8 1143 32.8
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 4.1e-117 427.2 907 36.9
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 6.9e-117 426.4 1107 33.4
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 9.1e-117 426.0 1195 32.5
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.7e-115 421.8 1111 33.6
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.9e-115 421.0 1214 31.8
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.5e-115 419.9 1103 33.1
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.2e-113 415.6 1170 32.9
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.6e-113 415.2 1114 32.8
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.3e-112 411.4 999 34.2
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.6e-111 407.9 1077 33.1
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 5.7e-111 406.8 998 33.9
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.7e-111 406.0 988 34.4
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.1e-109 401.0 994 34.2
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 9.1e-109 399.4 841 35.1
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 7.9e-105 386.3 1045 32.9
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 5.7e-103 380.2 1213 29.5
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 3.1e-101 374.4 967 33.7
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.2e-100 372.5 814 35.4
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.6e-100 372.1 1052 33.1
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.1e-98 365.9 1111 30.9
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 4.2e-98 364.0 1115 30.0
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 2.1e-97 361.7 1111 30.3
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 4.4e-95 354.0 1114 30.4
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.3e-94 352.4 1177 29.0
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 7.0e-93 346.7 1250 28.6
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 2.0e-92 345.1 1091 31.2
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 3.2e-90 337.8 1153 29.8
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 7.2e-90 336.7 814 33.2
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.2e-90 336.7 525 42.1
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 7.2e-90 336.7 1093 30.3
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.1e-85 322.8 1059 29.9
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 5.2e-80 303.9 975 30.9
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 8.8e-80 303.1 953 31.0
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.5e-79 302.4 1085 30.0
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.3e-78 299.3 1083 29.6
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 2.4e-77 295.0 1074 28.4
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 2.4e-77 295.0 1130 28.5
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 5.4e-77 293.9 896 31.2
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 5.4e-77 293.9 1101 28.3
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 7.0e-77 293.5 1037 27.8
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 2.7e-76 291.6 1024 30.2
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 3.8e-75 287.7 1074 28.3
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 6.6e-75 287.0 1073 29.2
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 1.2e-73 282.7 1072 28.4
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.6e-73 282.3 1057 27.9
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 2.1e-73 282.0 868 30.9
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 4.7e-73 280.8 286 57.3
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 4.0e-72 277.7 1046 27.4
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 6.8e-72 276.9 870 28.5
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 8.9e-72 276.6 1072 29.1
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.2e-71 276.2 1049 29.2
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 8.3e-70 270.0 320 52.2
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.8e-69 268.9 1026 28.2
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.6e-65 255.8 1074 27.9
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.6e-65 255.8 1032 27.5
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 3.6e-65 254.6 1066 26.6
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 4.7e-65 254.2 1037 26.8
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 6.2e-65 253.8 1074 27.9
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.1e-64 253.1 908 30.1
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.8e-64 252.3 1053 26.6
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.3e-64 251.9 800 29.6
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.5e-63 249.2 1075 27.7
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.5e-63 249.2 949 29.1
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 2.0e-63 248.8 1050 27.4
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 5.8e-63 247.3 812 31.4
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.7e-62 245.7 1058 28.2
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 3.7e-62 244.6 1066 27.2
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.6e-60 239.2 806 30.3
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 3.5e-60 238.0 704 30.8
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 6.0e-60 237.3 1039 26.8
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 2.3e-59 235.3 758 29.8
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 2.5e-58 231.9 601 31.3
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 3.1e-56 224.9 1045 26.8
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 2.6e-55 221.9 985 27.2
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 1.4e-53 216.1 628 28.5
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 9.2e-53 213.4 916 26.5
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 2.1e-52 212.2 793 29.9
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 7.8e-52 210.3 1155 25.8
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 6.6e-51 207.2 1012 25.0
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 1.8e-48 199.1 928 26.8
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.0e-48 198.0 416 34.4
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.0e-48 198.0 416 34.4
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 4.0e-48 198.0 416 34.4
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 7.6e-47 193.7 462 33.8
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.1e-42 179.9 497 29.6
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 2.8e-41 175.3 704 27.6
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 1.2e-39 169.9 238 45.0
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 3.1e-32 145.2 184 50.5
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 3.4e-31 141.7 500 27.0
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 2.1e-28 132.5 316 32.9
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.3e-27 129.8 392 29.8
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.8e-27 129.4 495 28.7
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 3.9e-27 128.3 461 26.5
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 6.7e-27 127.5 316 32.3
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 8.7e-27 127.1 324 32.4
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 9.6e-26 123.6 366 28.1
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.4e-24 119.8 583 25.9
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 3.4e-23 115.2 248 42.7
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.3e-22 113.2 165 41.2
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.9e-18 99.4 135 40.7
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 2.5e-18 99.0 149 36.9
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 4.3e-18 98.2 300 32.0
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.2e-12 80.1 110 44.5
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 2.5e-10 72.4 86 50.0
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 1.2e-07 63.5 177 33.3
Medtr7g451470 Medicago truncatula HOM05D002737 ORTHO05D009499 2.0e-07 62.8 224 27.2
SMO228G0186 Selaginella moellendorffii HOM05D019256 ORTHO05D023510 7.6e-07 60.8 449 24.1
Lj6g0020062 Lotus japonicus HOM05D005129 ORTHO05D005585 3.8e-06 58.5 46 71.7


User provided reference genes

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