Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.8e-191 671.4 349 100.0
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 7.9e-165 583.9 350 86.9
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 1.3e-164 583.2 350 86.6
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 5.3e-153 544.7 351 79.8
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.8e-148 529.6 349 78.8
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 3.0e-148 528.9 349 79.1
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.2e-144 516.9 350 76.9
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 7.5e-139 497.7 348 74.1
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.7e-138 496.5 348 74.1
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.2e-138 496.1 329 80.2
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 4.7e-133 478.4 349 73.9
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.3e-130 470.3 348 71.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 3.7e-130 468.8 348 71.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.7e-111 406.8 265 80.8
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 7.5e-107 391.3 353 58.9
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.1e-105 387.5 353 59.5
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.1e-105 387.5 352 58.5
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.4e-105 387.1 352 60.8
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 7.0e-105 384.8 350 58.9
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.7e-104 382.9 352 59.1
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.7e-104 382.9 352 59.1
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 6.0e-104 381.7 350 58.6
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.7e-103 380.2 352 57.1
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 3.9e-103 379.0 352 58.2
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.9e-103 379.0 352 59.4
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 5.0e-103 378.6 351 60.4
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 7.3e-102 374.8 354 59.0
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 9.5e-102 374.4 351 58.7
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-101 374.0 352 56.8
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.1e-101 373.2 352 57.1
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 3.6e-101 372.5 352 57.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.3e-100 369.8 349 56.2
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 2.3e-100 369.8 359 57.9
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.1e-100 369.4 352 55.4
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 5.2e-100 368.6 352 56.5
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.4e-99 365.9 352 54.8
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.2e-97 359.4 362 53.9
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.1e-97 359.0 362 54.1
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.4e-97 358.6 394 52.0
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 5.4e-97 358.6 337 57.3
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.5e-96 355.9 352 54.0
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.6e-95 351.7 353 56.9
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 3.3e-94 349.4 350 52.3
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.3e-94 349.4 352 54.0
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-93 347.1 352 54.0
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 6.2e-93 345.1 350 52.3
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.3e-92 343.2 352 54.0
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.1e-92 342.8 361 51.8
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 4.0e-92 342.4 362 53.6
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 6.8e-92 341.7 355 53.2
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 2.6e-91 339.7 329 56.2
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 5.8e-91 338.6 348 52.0
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.9e-90 336.3 337 55.5
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 4.9e-90 335.5 355 53.0
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.4e-89 334.0 357 53.5
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 3.2e-89 332.8 352 50.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.7e-88 329.7 356 52.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.1e-86 324.3 319 55.2
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.1e-86 324.3 342 52.3
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.9e-86 323.6 341 55.4
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.1e-85 320.1 357 51.8
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.8e-85 319.7 320 56.2
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.4e-84 316.6 362 51.7
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 3.1e-84 316.2 359 49.6
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.2e-83 314.3 358 49.2
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.5e-83 313.9 356 50.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 4.9e-82 308.9 354 48.3
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.4e-81 307.4 352 51.1
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.9e-81 307.0 348 49.4
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 2.4e-81 306.6 306 55.2
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 3.2e-81 306.2 357 49.3
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.2e-80 304.3 352 49.7
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.2e-80 304.3 353 48.4
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.1e-80 303.5 357 49.3
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 3.5e-80 302.8 344 49.4
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.6e-80 302.4 356 47.8
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.3e-79 300.8 356 49.2
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 2.3e-79 300.1 355 47.9
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.3e-79 300.1 355 47.9
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 3.0e-79 299.7 348 48.3
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 5.1e-79 298.9 351 48.4
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.5e-78 297.4 348 47.4
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.5e-78 296.6 350 48.0
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 3.3e-78 296.2 327 50.8
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 4.8e-77 292.4 351 48.4
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 4.8e-77 292.4 351 48.4
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.0e-76 289.3 344 49.1
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 6.9e-76 288.5 352 47.2
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.6e-75 286.6 351 48.1
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.6e-75 286.6 350 48.0
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 5.8e-75 285.4 353 47.6
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 5.8e-75 285.4 353 47.3
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 9.9e-75 284.6 353 47.6
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.7e-74 283.9 351 47.0
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-74 283.9 350 47.4
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.2e-74 283.5 350 47.4
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.2e-74 283.5 350 47.4
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 4.9e-74 282.3 350 47.4
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-73 280.8 350 47.4
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 2.4e-73 280.0 351 47.3
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.2e-73 279.6 353 47.6
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.6e-72 277.3 353 47.0
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 2.1e-72 276.9 362 46.7
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 2.7e-72 276.6 348 46.3
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.5e-72 276.2 351 46.4
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 4.6e-72 275.8 351 47.3
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-71 274.2 354 46.3
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.3e-71 274.2 354 46.3
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.0e-71 273.1 347 45.2
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 6.7e-71 271.9 309 50.8
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.1e-70 271.2 351 45.6
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.9e-70 270.4 351 45.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.9e-70 270.4 351 45.3
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.8e-69 266.5 355 46.5
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 5.3e-68 262.3 348 42.5
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 9.0e-68 261.5 374 44.1
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.5e-67 260.8 353 43.6
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.9e-66 256.5 356 41.9
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 4.9e-66 255.8 348 43.1
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 6.4e-66 255.4 356 41.6
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 3.5e-64 249.6 348 41.7
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 8.7e-63 245.0 263 49.0
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 2.5e-62 243.4 328 44.2
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 5.6e-62 242.3 333 42.9
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 3.7e-61 239.6 331 45.3
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.2e-59 234.6 325 44.6
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 7.1e-57 225.3 357 40.3
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 6.5e-50 202.2 195 56.4
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.6e-48 197.6 327 39.8
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 4.6e-48 196.1 266 43.6
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 6.5e-34 149.1 102 73.5
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 1.0e-31 141.7 366 29.5
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 2.3e-31 140.6 370 32.4
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.5e-30 137.9 157 49.0
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-28 131.3 139 48.9
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 4.5e-27 126.3 158 46.2
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.5e-26 122.5 126 50.0
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.5e-26 122.1 131 49.6
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.5e-25 121.3 260 34.6
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 3.2e-25 120.2 131 53.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 8.0e-24 115.5 135 46.7
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.4e-23 114.8 199 37.2
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 3.0e-23 113.6 386 26.7
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 2.2e-21 107.5 64 84.4
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.2e-21 107.5 374 25.4
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.7e-18 97.8 360 26.1
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.5e-14 84.7 236 30.5
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.4e-14 83.2 131 35.1
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.6e-11 74.7 98 43.9
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 7.2e-09 65.9 77 45.5
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 9.5e-09 65.5 54 57.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.2e-08 65.1 54 61.1
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-08 65.1 64 51.6
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.2e-08 65.1 89 39.3
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.2e-08 65.1 89 39.3
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 1.6e-08 64.7 82 36.6
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 2.1e-08 64.3 64 51.6
HPP92_028133 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.3e-07 60.8 127 35.4
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 5.2e-07 59.7 54 50.0


User provided reference genes

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