Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 0.0e+00 1105.9 593 100.0
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 7.9e-250 867.1 592 82.4
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 8.6e-228 793.9 587 76.0
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 1.2e-221 773.5 603 74.0
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 5.6e-219 764.6 618 73.0
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 3.0e-217 758.8 601 74.0
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.6e-213 746.5 602 72.3
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 4.3e-211 738.4 587 73.8
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 1.4e-209 733.4 618 70.9
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 8.9e-209 730.7 583 71.9
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 6.6e-196 688.0 600 68.5
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.9e-187 659.8 600 66.2
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 3.4e-160 569.3 592 55.9
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 3.6e-141 506.1 596 52.3
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 5.7e-139 498.8 629 50.6
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 9.7e-139 498.0 590 53.1
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 1.7e-135 487.3 588 51.5
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 5.5e-134 482.3 582 53.1
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 5.7e-131 472.2 595 51.4
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 9.7e-131 471.5 613 49.4
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 9.7e-131 471.5 589 51.3
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.1e-129 468.0 624 47.9
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 1.4e-129 467.6 604 50.3
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 4.1e-129 466.1 588 50.3
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 4.5e-128 462.6 592 49.8
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 8.5e-127 458.4 599 50.9
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 1.5e-126 457.6 601 49.6
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.5e-126 457.6 589 50.3
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 2.5e-126 456.8 614 47.6
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 4.2e-126 456.1 602 48.7
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.0e-124 451.4 607 49.1
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 1.8e-124 450.7 604 49.0
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 7.5e-123 445.3 622 47.4
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 3.5e-120 436.4 605 48.4
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 5.9e-120 435.6 591 49.7
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 7.7e-120 435.3 595 47.1
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 7.7e-120 435.3 600 49.2
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 1.3e-119 434.5 595 47.7
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 2.7e-117 426.8 636 46.1
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.8e-116 424.1 594 47.5
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 4.0e-116 422.9 580 48.4
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 8.8e-116 421.8 632 44.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.6e-115 420.2 588 47.6
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 4.4e-115 419.5 628 44.9
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 8.3e-114 415.2 591 47.5
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 1.4e-113 414.5 593 46.7
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 3.1e-113 413.3 655 45.0
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 1.2e-112 411.4 596 47.1
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 5.9e-112 409.1 595 45.9
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.0e-111 408.3 589 46.5
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 8.0e-109 398.7 591 46.4
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 1.0e-108 398.3 647 42.0
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.4e-108 397.9 581 45.6
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 1.8e-108 397.5 582 47.4
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 2.3e-108 397.1 616 44.6
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 1.2e-107 394.8 587 46.2
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 5.7e-107 392.5 588 46.1
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 5.7e-107 392.5 638 42.9
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 7.5e-107 392.1 581 45.3
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 1.3e-106 391.3 593 45.7
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 2.8e-106 390.2 621 44.0
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 4.9e-106 389.4 612 44.0
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 8.3e-106 388.7 606 44.7
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 1.0e-103 381.7 586 44.5
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 2.9e-103 380.2 646 42.3
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 8.6e-103 378.6 593 45.0
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.6e-101 374.4 604 45.4
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 2.8e-101 373.6 623 43.2
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.8e-100 370.9 474 50.4
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 4.1e-97 359.8 558 45.3
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 3.5e-96 356.7 572 45.5
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 4.6e-96 356.3 583 42.7
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.3e-95 354.0 579 42.5
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 2.3e-95 354.0 500 46.0
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 5.6e-94 349.4 542 46.9
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.6e-93 347.8 593 42.5
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 8.9e-92 342.0 595 40.7
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 8.9e-92 342.0 592 41.4
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 3.4e-91 340.1 594 41.9
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.6e-88 329.7 588 39.6
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 4.6e-88 329.7 243 74.9
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 6.0e-88 329.3 580 40.9
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 3.6e-85 320.1 607 40.9
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 1.4e-84 318.2 599 38.9
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 3.4e-83 313.5 580 40.3
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.5e-83 312.4 611 40.3
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 1.7e-82 311.2 578 38.1
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 4.9e-82 309.7 569 41.1
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 2.3e-79 300.8 484 45.0
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 3.0e-79 300.4 459 45.3
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 5.1e-79 299.7 650 36.5
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 3.1e-76 290.4 611 36.3
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.9e-74 283.9 610 37.4
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 5.4e-73 279.6 593 39.1
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.3e-71 275.0 602 37.2
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 1.9e-70 271.2 602 36.7
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 2.5e-70 270.8 585 37.9
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 4.3e-70 270.0 597 35.8
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 2.1e-69 267.7 610 34.6
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 4.0e-68 263.5 587 35.3
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.5e-67 261.5 499 40.7
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 1.5e-67 261.5 336 53.9
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.3e-66 258.5 590 35.8
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.9e-66 257.3 587 36.6
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 8.4e-66 255.8 590 35.3
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.4e-65 255.0 589 35.5
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 7.1e-65 252.7 592 35.1
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 9.3e-65 252.3 344 45.9
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 4.6e-64 250.0 578 35.6
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.9e-62 244.6 604 34.8
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 4.0e-60 236.9 334 45.2
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.9e-55 220.3 265 51.7
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 8.4e-42 176.0 168 56.0
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 4.2e-41 173.7 592 30.9
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 5.5e-41 173.3 396 40.4
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 7.1e-41 172.9 249 44.6
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 3.0e-39 167.5 338 39.1
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 3.9e-39 167.2 247 46.2
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 5.1e-39 166.8 640 30.0
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 6.1e-32 143.3 640 28.0
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 1.4e-31 142.1 611 29.3
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 6.7e-31 139.8 190 49.5
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 5.9e-27 126.7 203 41.4
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.1e-22 112.5 90 56.7
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 2.8e-21 107.8 82 59.8
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 7.0e-20 103.2 136 50.7
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 3.5e-19 100.9 128 51.6
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 1.0e-18 99.4 641 25.1
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 6.1e-16 90.1 617 26.3
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.0e-14 85.1 126 45.2
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 3.3e-14 84.3 549 24.8
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 5.9e-11 73.6 199 31.7
MD04G1246500 Malus domestica HOM05D005724 ORTHO05D006636 3.4e-06 57.8 42 61.9


User provided reference genes

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