Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 0.0e+00 1432.5 713 100.0
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 0.0e+00 1213.7 694 85.4
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 0.0e+00 1203.7 712 83.7
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1149.4 708 79.4
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1148.7 707 79.5
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 0.0e+00 1130.5 708 78.4
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1120.9 710 76.5
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 0.0e+00 1104.7 713 75.5
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 6.5e-307 1057.0 708 73.9
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.9e-306 1055.4 636 80.3
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 2.0e-303 1045.4 713 71.9
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.0e-300 1035.4 713 71.4
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.6e-297 1025.8 711 71.0
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 2.3e-296 1021.9 714 70.2
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 6.3e-294 1013.8 710 70.1
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.4e-288 996.1 709 69.0
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.8e-285 985.7 715 68.8
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 2.3e-280 968.8 704 68.2
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 4.9e-270 934.5 716 63.1
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 8.3e-270 933.7 715 66.3
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 8.3e-270 933.7 666 68.2
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 6.0e-268 927.5 722 63.0
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 8.6e-267 923.7 725 63.6
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 2.8e-265 918.7 724 63.0
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 7.3e-258 894.0 728 61.5
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 3.1e-256 888.6 722 60.4
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 2.6e-255 885.6 724 60.1
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 3.2e-253 878.6 716 59.4
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 3.0e-251 872.1 729 58.8
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 8.6e-251 870.5 679 62.4
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 4.3e-250 868.2 724 59.7
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 2.4e-248 862.4 727 58.5
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 1.5e-247 859.8 713 59.0
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 2.0e-247 859.4 725 59.7
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.2e-244 850.1 726 57.7
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 3.5e-244 848.6 721 59.4
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 6.0e-244 847.8 727 58.6
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.3e-243 846.7 696 58.8
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 3.9e-243 845.1 728 59.5
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 5.1e-243 844.7 723 58.4
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 2.8e-241 839.0 728 58.1
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.6e-241 838.6 716 59.1
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 7.6e-239 830.9 725 58.1
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 9.9e-239 830.5 721 57.4
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 5.4e-237 824.7 716 57.1
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 7.9e-236 820.8 729 57.2
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.0e-235 818.9 720 57.2
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.1e-235 818.1 716 57.3
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.6e-235 817.8 716 57.4
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.1e-234 817.0 760 55.4
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 2.5e-234 815.8 728 57.0
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.1e-233 812.8 716 57.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.2e-233 811.2 727 56.3
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.8e-232 809.7 727 55.7
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 2.4e-232 809.3 669 59.3
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.2e-230 802.7 646 61.0
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 7.1e-229 797.7 724 55.0
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 9.3e-229 797.3 736 54.9
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 2.3e-227 792.7 694 55.8
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.6e-226 788.1 723 55.6
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.1e-225 786.2 727 54.7
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.1e-225 784.3 722 55.8
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.4e-224 783.5 682 57.9
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 1.4e-221 773.5 727 54.3
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.2e-220 770.4 729 54.6
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.6e-220 768.5 724 52.6
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.3e-219 766.9 692 54.6
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.3e-219 766.1 674 57.3
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 6.7e-219 764.6 700 55.6
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.6e-217 760.0 698 54.6
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 8.2e-217 757.7 671 56.2
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 5.3e-216 755.0 731 54.0
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.5e-215 753.4 702 53.6
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.4e-215 752.3 727 53.4
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 4.5e-215 751.9 723 53.3
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 4.5e-215 751.9 714 53.4
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 2.9e-214 749.2 724 53.3
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.9e-214 749.2 725 52.7
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 3.8e-214 748.8 728 52.6
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 6.5e-214 748.0 729 53.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.1e-213 747.3 733 53.8
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 2.5e-213 746.1 730 53.6
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.3e-211 740.3 731 53.4
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.3e-211 740.3 651 54.8
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 3.3e-210 735.7 739 51.4
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 7.4e-210 734.6 727 52.4
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.3e-209 733.8 734 51.9
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 8.2e-209 731.1 694 52.4
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 2.4e-208 729.6 702 52.6
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 5.9e-207 724.9 694 52.6
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 5.9e-207 724.9 718 52.5
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 2.2e-206 723.0 699 52.4
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 2.2e-206 723.0 699 52.4
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.1e-205 720.7 579 60.8
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.4e-205 717.6 716 51.5
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 8.8e-203 711.1 733 50.9
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 3.7e-201 705.7 724 51.2
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 4.8e-201 705.3 680 52.4
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.2e-199 700.7 731 49.8
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.0e-198 697.6 728 51.4
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.7e-198 696.8 750 49.7
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.4e-197 693.7 750 49.2
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.9e-197 693.3 676 51.5
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.1e-194 684.1 711 50.1
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.4e-194 682.2 645 53.3
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.6e-191 673.7 663 53.7
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.1e-189 667.5 684 50.4
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.3e-185 654.1 571 55.9
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.8e-184 650.2 617 52.7
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 2.1e-180 636.7 731 46.0
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.4e-179 634.0 739 46.5
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 3.4e-178 629.4 767 43.8
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 9.8e-178 627.9 729 45.3
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 2.2e-174 616.7 782 44.5
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 7.7e-167 591.7 439 64.9
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.1e-164 583.6 729 43.5
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.0e-162 577.0 714 44.8
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 6.4e-161 572.0 719 43.0
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 5.9e-159 565.5 722 44.6
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.8e-155 553.9 726 41.9
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.4e-154 549.7 707 40.3
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 3.0e-150 536.6 607 45.8
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 2.4e-136 490.3 359 68.2
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.1e-135 487.3 445 53.5
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.0e-134 485.0 500 49.0
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 7.3e-125 452.2 563 42.5
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.5e-117 427.2 613 39.3
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.5e-112 409.5 425 50.8
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.1e-110 402.9 598 38.5
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 3.3e-109 400.2 291 66.3
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 4.8e-108 396.4 242 80.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 5.7e-101 372.9 446 42.6
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.4e-96 358.2 248 69.8
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.4e-85 320.1 352 44.9
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 2.8e-84 317.4 399 43.6
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 6.3e-84 316.2 670 31.5
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.8e-76 290.0 463 38.2
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.3e-73 282.0 767 26.7
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 2.0e-66 258.1 223 57.4
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 7.7e-66 256.1 286 49.3
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 2.5e-64 251.1 414 33.8
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.0e-57 226.9 196 57.1
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 4.1e-51 207.2 216 49.1
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.4e-27 129.0 113 47.8
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.7e-25 122.1 143 44.8
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 9.5e-24 116.3 110 54.5
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 4.7e-23 114.0 107 53.3
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.6e-18 99.0 82 63.4
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.0e-17 96.3 87 62.1
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 2.3e-17 95.1 68 69.1
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 1.6e-15 89.0 50 80.0
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.7e-15 87.4 82 57.3
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.4e-14 85.1 143 32.2
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 3.0e-09 68.2 36 77.8
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 1.5e-08 65.9 88 40.9
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 7.3e-08 63.5 62 48.4


User provided reference genes

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