Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.7e-146 522.7 272 100.0
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.8e-114 415.2 313 75.4
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 6.7e-111 404.4 311 74.6
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.1e-110 403.7 312 74.4
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 3.4e-99 365.5 318 69.5
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.9e-95 352.1 312 67.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 5.3e-84 315.1 314 62.7
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.0e-83 313.2 313 62.0
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.9e-82 309.3 317 60.9
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.9e-81 306.6 315 60.6
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 4.2e-81 305.4 317 59.6
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 4.2e-81 305.4 318 60.7
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.3e-66 257.3 323 54.5
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 2.5e-65 253.1 318 52.5
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 3.3e-65 252.7 313 54.3
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.1e-64 250.0 274 60.2
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.1e-64 250.0 313 54.0
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 3.0e-63 246.1 321 53.0
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 3.0e-63 246.1 321 52.3
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 3.0e-63 246.1 328 52.4
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 6.8e-63 245.0 306 54.2
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 2.6e-62 243.0 303 52.8
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 9.8e-62 241.1 326 52.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.2e-61 240.0 323 51.4
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.2e-61 240.0 326 52.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 4.9e-61 238.8 313 51.8
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 4.9e-61 238.8 315 52.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 4.9e-61 238.8 325 49.2
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 8.3e-61 238.0 319 50.8
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 5.4e-60 235.3 324 50.6
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 1.2e-59 234.2 326 49.1
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.6e-59 233.8 327 52.9
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 5.9e-59 231.9 325 51.1
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 7.8e-59 231.5 294 51.7
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.3e-58 230.7 329 50.2
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.7e-58 230.3 321 51.4
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.0e-58 229.6 315 50.2
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.0e-58 229.6 329 48.9
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 3.9e-58 229.2 330 49.4
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 3.9e-58 229.2 320 50.9
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.0e-58 228.8 308 50.3
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.1e-57 227.6 318 49.1
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 1.1e-57 227.6 326 50.3
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.1e-57 227.6 321 50.2
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.5e-57 226.5 332 50.0
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 3.3e-57 226.1 256 55.9
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.3e-57 226.1 316 48.4
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.2e-56 224.2 315 50.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.6e-56 223.8 303 52.5
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 2.8e-56 223.0 332 49.4
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 6.2e-56 221.9 273 53.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.3e-55 219.9 297 48.5
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 7.5e-54 214.9 318 47.5
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.3e-53 214.2 331 47.7
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.7e-53 213.8 337 46.6
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.1e-52 211.1 315 48.3
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 1.1e-52 211.1 345 47.8
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.9e-52 210.3 305 49.8
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.2e-52 209.5 254 53.1
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.2e-51 207.6 338 44.1
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.6e-51 207.2 331 48.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.6e-51 207.2 254 52.8
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 7.8e-51 204.9 320 46.9
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.3e-50 204.1 314 46.5
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.7e-50 203.8 254 51.2
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 2.3e-50 203.4 310 48.1
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 5.0e-50 202.2 325 44.6
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 5.0e-50 202.2 323 47.4
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.6e-50 201.8 291 48.1
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.5e-49 199.9 254 53.1
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 5.6e-49 198.7 322 46.0
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.3e-49 198.4 254 53.1
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 7.3e-49 198.4 320 47.2
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.2e-48 197.6 254 52.4
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 4.7e-48 195.7 315 47.0
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.2e-48 195.3 314 46.5
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 8.1e-48 194.9 294 46.9
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.8e-47 193.7 249 51.8
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.8e-47 193.7 316 45.6
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 2.3e-47 193.4 318 45.0
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.0e-46 190.3 311 45.3
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.0e-46 190.3 324 45.1
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 4.4e-46 189.1 314 45.2
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.7e-45 187.2 313 45.0
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 4.9e-45 185.7 319 44.2
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 8.3e-45 184.9 317 43.8
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.4e-44 183.3 314 44.3
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.4e-44 183.3 288 46.2
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.6e-43 180.6 255 48.2
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.6e-43 180.6 314 44.9
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.6e-43 179.1 220 52.7
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.7e-42 177.2 312 44.9
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 6.6e-42 175.3 255 47.8
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.5e-41 174.1 221 52.0
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.2e-40 171.0 321 43.3
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 4.7e-40 169.1 314 40.8
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 5.2e-39 165.6 326 42.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 6.8e-39 165.2 204 52.0
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 2.0e-38 163.7 191 57.1
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 3.8e-37 159.5 321 39.3
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 3.2e-36 156.4 337 37.4
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 6.0e-35 152.1 286 43.0
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 3.0e-34 149.8 245 44.1
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 6.6e-34 148.7 304 38.8
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 2.5e-33 146.7 215 47.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.5e-33 146.7 300 38.7
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.5e-33 146.7 300 38.7
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.5e-33 146.7 300 38.7
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.5e-33 146.7 304 38.8
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 3.3e-33 146.4 247 44.5
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 4.3e-33 146.0 237 44.7
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 4.3e-33 146.0 237 44.7
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 4.3e-33 146.0 248 44.0
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.2e-32 144.4 329 40.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.2e-32 144.4 316 39.6
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.6e-32 144.1 175 50.9
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.8e-32 143.3 304 37.8
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 8.1e-32 141.7 181 51.9
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.8e-31 140.6 182 51.1
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.8e-31 140.6 182 51.1
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 1.2e-30 137.9 108 68.5
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 4.9e-29 132.5 280 37.9
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 7.8e-27 125.2 272 36.4
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 3.0e-26 123.2 316 37.7
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 4.0e-23 112.8 175 46.9
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 2.2e-21 107.1 111 60.4
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 3.9e-18 96.3 283 34.6
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.9e-17 94.0 165 44.2
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 9.6e-17 91.7 259 34.7
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 1.4e-15 87.8 165 41.8
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.4e-12 77.0 292 33.2
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 7.1e-12 75.5 93 53.8
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-10 71.6 90 50.0
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-10 71.6 127 43.3
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.0e-10 71.6 90 50.0
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.5e-09 67.8 222 33.3
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 2.5e-09 67.0 112 47.3
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 3.3e-09 66.6 81 45.7
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 9.6e-09 65.1 140 39.3
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-08 64.7 95 47.4


User provided reference genes

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