Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 5.7e-86 320.9 160 100.0
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.2e-72 276.6 158 85.4
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 1.0e-71 273.5 158 84.2
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 1.5e-70 269.6 160 81.2
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.1e-68 263.5 164 78.7
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 2.4e-68 262.3 151 82.8
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 9.2e-68 260.4 159 78.0
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 2.0e-67 259.2 157 82.2
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.5e-65 253.1 157 78.3
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.2e-64 250.0 154 77.3
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 9.5e-49 197.2 121 83.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 4.7e-48 194.9 137 64.2
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 2.7e-43 179.1 160 55.0
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 6.0e-43 177.9 160 53.8
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.3e-42 176.8 155 56.1
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 8.1e-40 167.5 155 53.5
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 5.3e-39 164.9 117 63.2
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.0e-38 162.9 159 54.1
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 3.4e-38 162.2 153 52.3
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.3e-37 160.2 153 51.0
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.7e-37 159.8 155 51.0
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 1.7e-37 159.8 153 49.7
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 2.2e-37 159.5 153 52.9
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 2.9e-37 159.1 159 51.6
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.1e-36 157.1 155 49.7
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.4e-36 156.8 155 50.3
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.4e-36 156.8 155 50.3
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 4.2e-36 155.2 153 48.4
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.4e-36 154.8 138 51.4
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 9.3e-36 154.1 154 50.6
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 9.3e-36 154.1 153 48.4
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 3.9e-34 148.7 161 46.0
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 5.1e-34 148.3 150 50.0
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 8.7e-34 147.5 155 49.0
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.9e-33 146.4 153 49.0
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.3e-33 145.2 155 45.8
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 9.6e-33 144.1 155 48.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.3e-32 143.7 123 59.3
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 3.6e-32 142.1 155 47.1
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-30 137.1 163 46.6
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.2e-30 137.1 155 43.2
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.6e-30 136.0 160 45.0
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.6e-30 136.0 123 56.1
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 9.9e-30 134.0 149 45.6
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 6.4e-29 131.3 156 42.3
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 1.4e-28 130.2 123 54.5
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 7.1e-28 127.9 123 45.5
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 3.5e-27 125.6 142 43.7
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 3.5e-27 125.6 142 43.7
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 6.0e-27 124.8 124 50.0
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.0e-26 124.0 129 45.7
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.0e-26 122.5 157 41.4
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 3.9e-26 122.1 171 40.9
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 3.9e-26 122.1 153 43.1
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 5.1e-26 121.7 155 37.4
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 6.7e-26 121.3 136 43.4
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 8.7e-26 120.9 138 43.5
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.1e-25 120.6 154 39.6
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.9e-25 119.8 157 42.0
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.9e-25 119.8 157 42.0
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 3.3e-25 119.0 166 40.4
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 3.3e-25 119.0 162 40.7
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 3.3e-25 119.0 162 40.7
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 3.3e-25 119.0 136 42.6
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 4.3e-25 118.6 140 43.6
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 4.3e-25 118.6 140 43.6
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 4.3e-25 118.6 157 42.0
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 5.6e-25 118.2 154 40.9
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 5.6e-25 118.2 161 40.4
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 7.4e-25 117.9 151 41.7
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 9.6e-25 117.5 155 41.3
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-24 117.1 140 42.1
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.3e-24 117.1 140 42.1
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.3e-24 117.1 140 40.7
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.8e-24 115.9 153 40.5
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.8e-24 115.9 151 37.1
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 3.7e-24 115.5 151 39.1
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 3.7e-24 115.5 154 38.3
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 4.8e-24 115.2 132 44.7
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 6.2e-24 114.8 156 36.5
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 8.1e-24 114.4 149 38.3
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 8.1e-24 114.4 129 41.9
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 8.1e-24 114.4 158 39.9
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.8e-23 113.2 156 37.8
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.8e-23 113.2 147 38.8
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 2.4e-23 112.8 155 37.4
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.4e-23 112.8 154 40.3
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 3.1e-23 112.5 154 36.4
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 3.1e-23 112.5 157 38.2
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.1e-23 112.5 156 39.7
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 4.0e-23 112.1 116 50.9
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 4.0e-23 112.1 151 40.4
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 4.0e-23 112.1 154 39.0
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 4.0e-23 112.1 154 37.0
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 6.9e-23 111.3 132 42.4
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 9.0e-23 110.9 134 40.3
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 9.0e-23 110.9 160 38.1
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 1.2e-22 110.5 151 37.7
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.2e-22 110.5 146 39.0
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.5e-22 110.2 147 38.1
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 2.0e-22 109.8 161 42.2
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 2.0e-22 109.8 161 42.2
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 2.0e-22 109.8 153 40.5
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 2.0e-22 109.8 131 40.5
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 2.6e-22 109.4 161 42.2
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 2.6e-22 109.4 161 41.0
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 2.6e-22 109.4 161 42.2
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 2.6e-22 109.4 161 42.2
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 2.6e-22 109.4 128 40.6
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.6e-22 109.4 152 36.2
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.4e-22 109.0 152 36.8
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 3.4e-22 109.0 150 37.3
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.5e-22 108.6 156 35.9
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.5e-22 108.6 152 36.8
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 4.5e-22 108.6 128 39.8
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 5.8e-22 108.2 148 39.2
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 5.8e-22 108.2 158 38.0
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 5.8e-22 108.2 157 38.2
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 9.9e-22 107.5 149 36.2
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.3e-21 107.1 148 39.2
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.3e-21 107.1 158 37.3
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.3e-21 107.1 155 36.8
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.7e-21 106.7 149 37.6
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.2e-21 106.3 159 35.8
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 2.9e-21 105.9 128 41.4
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 3.8e-21 105.5 154 37.0
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.8e-21 105.5 154 37.7
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 3.8e-21 105.5 157 36.9
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 6.4e-21 104.8 140 37.9
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 6.4e-21 104.8 151 37.7
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.1e-20 104.0 155 37.4
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.1e-20 104.0 155 36.8
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 1.4e-20 103.6 156 34.6
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 3.2e-20 102.4 104 52.9
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 3.2e-20 102.4 155 37.4
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 4.2e-20 102.1 149 36.2
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 4.2e-20 102.1 150 37.3
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 7.1e-20 101.3 162 32.7
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 7.9e-19 97.8 152 34.9
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.0e-18 97.4 163 34.4
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 2.3e-18 96.3 124 41.1
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.3e-18 96.3 119 42.9
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 3.0e-18 95.9 152 34.2
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 3.0e-18 95.9 143 34.3
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.0e-18 95.9 135 38.5
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 8.7e-18 94.4 133 34.6
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 8.7e-18 94.4 93 43.0
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.5e-17 93.6 145 35.2
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 1.5e-17 93.6 135 40.7
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.3e-16 90.5 60 61.7
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 2.1e-16 89.7 128 34.4
Glyma.15G116750 Glycine max HOM05D003663 ORTHO05D005327 3.1e-15 85.9 45 82.2
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.6e-14 82.8 90 45.6
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 3.4e-14 82.4 91 45.1
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 5.8e-14 81.6 109 38.5
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 4.9e-13 78.6 94 42.6
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 2.5e-12 76.3 159 32.1
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 3.2e-12 75.9 135 34.8
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 6.1e-11 71.6 154 31.2
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.2e-08 63.2 132 32.6
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 3.7e-08 62.4 132 31.8
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.4e-07 60.5 131 32.8
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.4e-07 59.7 122 29.5
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 5.3e-07 58.5 125 27.2
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.0e-06 56.6 122 27.9
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.6e-06 56.2 122 27.9


User provided reference genes

Program Settings