Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00720_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 1.2e-79 299.7 139 100.0
Psat1g176480 Pisum sativum HOM05D002685 ORTHO05D001487 2.6e-42 175.6 95 88.4
Lj6g0003651 Lotus japonicus HOM05D002685 ORTHO05D001487 4.3e-37 158.3 95 82.1
Phvul.006G143400 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 9.5e-37 157.1 95 76.8
VMungo0540G1760 Vigna mungo HOM05D002685 ORTHO05D001487 2.8e-36 155.6 95 75.8
Glyma.15G114400 Glycine max HOM05D002685 ORTHO05D001487 1.4e-35 153.3 95 74.7
Medtr2g025690 Medicago truncatula HOM05D002685 ORTHO05D001487 3.1e-35 152.1 95 77.9
Glyma.09G010100 Glycine max HOM05D002685 ORTHO05D001487 5.2e-35 151.4 137 55.5
arahy.Tifrunner.gnm1.ann1.4JG1SZ Arachis hypogaea HOM05D002685 ORTHO05D001487 1.6e-31 139.8 101 69.3
arahy.Tifrunner.gnm1.ann1.J75SJQ Arachis hypogaea HOM05D002685 ORTHO05D001487 1.6e-31 139.8 101 69.3
ClCG01G010270 Citrullus lanatus HOM05D002685 ORTHO05D001487 1.0e-30 137.1 99 69.7
QL05p033962 Quercus lobata HOM05D002685 ORTHO05D001487 1.7e-30 136.3 99 68.7
MELO3C021680.2 Cucumis melo HOM05D002685 ORTHO05D001487 2.3e-30 136.0 99 69.7
CsaV3_1G017210 Cucumis sativus L. HOM05D002685 ORTHO05D001487 2.3e-30 136.0 99 69.7
QL05p069750 Quercus lobata HOM05D002685 ORTHO05D001487 3.9e-30 135.2 99 68.7
CiPaw.09G102100 Carya illinoinensis HOM05D002685 ORTHO05D001487 5.1e-30 134.8 109 62.4
Haze_06918 Corylus avellana HOM05D002685 ORTHO05D001487 1.9e-29 132.9 108 62.0
Cfa000108 Carpinus fangiana HOM05D002685 ORTHO05D001487 4.3e-29 131.7 108 62.0
Haze_06923 Corylus avellana HOM05D002685 ORTHO05D001487 5.6e-29 131.3 108 62.0
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 9.5e-29 130.6 106 60.4
Potri.016G014900 Populus trichocarpa HOM05D002685 ORTHO05D001487 1.6e-28 129.8 102 64.7
RhsimUnG0109500 Rhododendron simsii HOM05D002685 ORTHO05D001487 2.8e-28 129.0 95 62.1
CANSAT56G3281 Cannabis sativa HOM05D002685 ORTHO05D001487 3.6e-28 128.6 101 59.4
Actinidia26861 Actinidia chinensis HOM05D002685 ORTHO05D001487 6.2e-28 127.9 95 65.3
Sabra16G0017000 Salix brachista HOM05D002685 ORTHO05D001487 1.4e-27 126.7 102 65.7
Duzib235G0187 Durio zibethinus HOM05D002685 ORTHO05D001487 1.8e-27 126.3 105 61.0
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.8e-27 126.3 96 63.5
Rhsim13G0146100 Rhododendron simsii HOM05D002685 ORTHO05D001487 1.8e-27 126.3 95 60.0
TAR624G0212 Trochodendron aralioides HOM05D002685 ORTHO05D001487 2.3e-27 125.9 95 62.1
FvH4_3g01021 Fragaria vesca HOM05D002685 ORTHO05D001487 4.0e-27 125.2 101 61.4
Prupe.4G011000 Prunus persica HOM05D002685 ORTHO05D001487 5.2e-27 124.8 99 64.6
Gohir.D06G215950 Gossypium hirsutum HOM05D002685 ORTHO05D001487 6.8e-27 124.4 104 57.7
Gorai.010G250200 Gossypium raimondii HOM05D002685 ORTHO05D001487 6.8e-27 124.4 104 57.7
Nn1g07360 Nelumbo nucifera HOM05D002685 ORTHO05D001487 6.8e-27 124.4 95 61.1
TWI38G0374 Tripterygium wilfordii HOM05D002685 ORTHO05D001487 8.9e-27 124.0 108 60.2
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 1.5e-26 123.2 95 65.3
MD10G1331200 Malus domestica HOM05D002685 ORTHO05D001487 1.5e-26 123.2 101 60.4
Gohir.A06G205701 Gossypium hirsutum HOM05D002685 ORTHO05D001487 3.4e-26 122.1 104 55.8
Ciclev10018181m.g Citrus clementina HOM05D002685 ORTHO05D001487 4.4e-26 121.7 100 60.0
Thecc.06G232900 Theobroma cacao HOM05D002685 ORTHO05D001487 4.4e-26 121.7 105 58.1
RcHm_v2.0_Chr5g0001561 Rosa chinensis HOM05D002685 ORTHO05D001487 9.9e-26 120.6 102 58.8
Sed0007957 Sechium edule HOM05D002685 ORTHO05D001487 9.9e-26 120.6 95 64.2
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 1.3e-25 120.2 109 56.0
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 1.7e-25 119.8 110 55.5
CSS0012165 Camellia sinensis var. sinensis HOM05D002685 ORTHO05D001487 1.7e-25 119.8 101 58.4
PGSC0003DMG400023607 Solanum tuberosum HOM05D002685 ORTHO05D001487 1.7e-25 119.8 96 62.5
Sp1g10730 Schrenkiella parvula HOM05D002685 ORTHO05D001487 2.2e-25 119.4 106 60.4
Nitab4.5_0001109g0010 Nicotiana tabacum HOM05D002685 ORTHO05D001487 2.9e-25 119.0 95 62.1
Atru.chr1.2459 Acer truncatum HOM05D002685 ORTHO05D001487 3.7e-25 118.6 96 63.5
C08p15160 Brassica napus HOM05D002685 ORTHO05D001487 3.7e-25 118.6 105 59.0
BolC8t49146H Brassica oleracea HOM05D002685 ORTHO05D001487 3.7e-25 118.6 105 59.0
Hma1.2p1_0700F.1_g205790 Hydrangea macrophylla HOM05D002685 ORTHO05D001487 4.9e-25 118.2 94 59.6
Solyc04g014740.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 4.9e-25 118.2 96 61.5
Sopen04g006850 Solanum pennellii HOM05D002685 ORTHO05D001487 4.9e-25 118.2 96 61.5
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 8.4e-25 117.5 111 54.1
A08p33050 Brassica napus HOM05D002685 ORTHO05D001487 1.1e-24 117.1 105 58.1
BraA08t35225Z Brassica rapa HOM05D002685 ORTHO05D001487 1.1e-24 117.1 105 58.1
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 5.4e-24 114.8 111 52.3
Nitab4.5_0003785g0010 Nicotiana tabacum HOM05D002685 ORTHO05D001487 5.4e-24 114.8 95 58.9
Oeu002766.1 Olea europaea HOM05D002685 ORTHO05D001487 1.2e-23 113.6 96 60.4
Peaxi162Scf00442g00043 Petunia axillaris HOM05D002685 ORTHO05D001487 2.1e-23 112.8 96 58.3
Thhalv10008770m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 4.6e-23 111.7 106 53.8
Lsat_1_v5_gn_4_62441 Lactuca sativa HOM05D002685 ORTHO05D001487 7.8e-23 110.9 98 58.2
Cpa.g.sc75.118 Carica papaya HOM05D002685 ORTHO05D001487 1.0e-22 110.5 112 56.2
SalBow8G4541 Salvia bowleyana HOM05D002685 ORTHO05D001487 1.0e-22 110.5 96 53.1
THA.LOC104823542 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 2.3e-22 109.4 102 60.8
Aa31LG1G2670 Aethionema arabicum HOM05D002685 ORTHO05D001487 3.9e-22 108.6 105 53.3
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 3.9e-22 108.6 96 56.2
RcHm_v2.0_Chr7g0203061 Rosa chinensis HOM05D002685 ORTHO05D001487 3.9e-22 108.6 106 51.9
SGA_v2.0_scaffold7G03758 Striga asiatica HOM05D002685 ORTHO05D001487 8.6e-22 107.5 95 53.7
Manes.10G111700 Manihot esculenta HOM05D002685 ORTHO05D001487 1.5e-21 106.7 97 52.6
Cc09_g00900 Coffea canephora HOM05D002685 ORTHO05D001487 2.5e-21 105.9 96 54.2
Migut.M01392 Erythranthe guttata HOM05D002685 ORTHO05D001487 3.3e-21 105.5 96 54.2
MSTRG.16026 Avicennia marina HOM05D002685 ORTHO05D001487 4.3e-21 105.1 96 52.1
HanXRQChr16g0516641 Helianthus annuus HOM05D002685 ORTHO05D001487 4.3e-21 105.1 98 56.1
DCAR_004886 Daucus carota HOM05D002685 ORTHO05D001487 7.3e-21 104.4 96 56.2
PGR004G1286 Punica granatum HOM05D002685 ORTHO05D001487 9.6e-21 104.0 100 54.0
AUR62021868 Chenopodium quinoa HOM05D002685 ORTHO05D001487 1.6e-20 103.2 97 52.6
Ah.09g234250 Amaranthus hybridus HOM05D002685 ORTHO05D001487 8.9e-19 97.4 97 48.5
Aqoxy1G04102 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 4.4e-18 95.1 102 51.0
PSO210G2053 Papaver somniferum HOM05D002685 ORTHO05D001487 5.8e-18 94.7 104 51.0
PSO764G0142 Papaver somniferum HOM05D002685 ORTHO05D001487 5.8e-18 94.7 104 51.0
MD07G1178100 Malus domestica HOM05D002685 ORTHO05D001487 1.7e-17 93.2 95 52.6
MD17G1215100 Malus domestica HOM05D002685 ORTHO05D001487 1.7e-17 93.2 95 52.6
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 1.6e-15 86.7 88 50.0
Eucgr.L00542 Eucalyptus grandis HOM05D002685 ORTHO05D001487 2.7e-15 85.9 96 47.9
Dinv07400 Davidia involucrata HOM05D002685 ORTHO05D001487 6.0e-15 84.7 95 49.5
MBI16_g41625_MAGBIO Magnolia biondii HOM05D002685 ORTHO05D001487 1.7e-14 83.2 89 46.1
PSO302G0162 Papaver somniferum HOM05D002685 ORTHO05D001487 1.7e-14 83.2 91 49.5
ECA240G3355 Erigeron canadensis HOM05D002685 ORTHO05D001487 2.3e-14 82.8 68 61.8
RcHm_v2.0_Chr4g0386881 Rosa chinensis HOM05D002685 ORTHO05D001487 2.3e-14 82.8 77 57.1
BcaC07g41055 Brassica carinata HOM05D002685 ORTHO05D001487 6.6e-14 81.3 47 80.9
BcaC07g41059 Brassica carinata HOM05D002685 ORTHO05D001487 6.6e-14 81.3 47 80.9
C08p40580 Brassica napus HOM05D002685 ORTHO05D001487 6.6e-14 81.3 47 80.9
MD14G1100700 Malus domestica HOM05D002685 ORTHO05D001487 3.3e-13 79.0 95 49.5
MD17G1165100 Malus domestica HOM05D002685 ORTHO05D001487 4.3e-13 78.6 95 48.4
unitig_32.g11048 Utricularia gibba HOM05D002685 ORTHO05D001487 4.3e-13 78.6 75 53.3
PSO210G1645 Papaver somniferum HOM05D002685 ORTHO05D001487 5.6e-13 78.2 94 48.9
Thhalv10027450m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 3.1e-11 72.4 85 47.1
RcHm_v2.0_Chr6g0263021 Rosa chinensis HOM05D002685 ORTHO05D001487 9.0e-11 70.9 77 50.6
BcaC02g07554 Brassica carinata HOM05D002685 ORTHO05D001487 1.5e-10 70.1 44 72.7
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 5.8e-10 68.2 50 64.0
MD09G1110100 Malus domestica HOM05D002685 ORTHO05D001487 5.8e-10 68.2 95 46.3
CAN.G103.4 Capsicum annuum HOM05D002685 ORTHO05D001487 2.4e-08 62.8 52 63.5
Os02g0719700 Oryza sativa ssp. japonica HOM05D002685 ORTHO05D001487 4.2e-08 62.0 45 66.7
RcHm_v2.0_Chr6g0277501 Rosa chinensis HOM05D002685 ORTHO05D001487 5.4e-08 61.6 36 80.6
Thhalv10015816m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 1.2e-07 60.5 78 42.3
Zm00001eb252920 Zea mays HOM05D002685 ORTHO05D001487 2.7e-07 59.3 51 58.8
SHI04197 Sapria himalayana HOM05D002685 ORTHO05D001487 3.5e-07 58.9 80 35.0
Nitab4.5_0000305g0330 Nicotiana tabacum HOM05D006269 ORTHO05D001487 4.6e-07 58.5 128 31.2
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 4.6e-07 58.5 128 31.2
Zm00001eb189410 Zea mays HOM05D002685 ORTHO05D001487 4.6e-07 58.5 45 62.2
Manes.13G007700 Manihot esculenta HOM05D002685 ORTHO05D001487 7.9e-07 57.8 54 51.9
Oeu058906.1 Olea europaea HOM05D002685 ORTHO05D001487 1.3e-06 57.0 48 54.2
THA.LOC104801613 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 2.3e-06 56.2 43 58.1
ATR1101G100 Amborella trichopoda HOM05D002685 ORTHO05D001487 3.0e-06 55.8 79 43.0
HPP92_022804 Vanilla planifolia HOM05D002685 ORTHO05D001487 3.0e-06 55.8 44 59.1
Sabra02G0145300 Salix brachista HOM05D006269 ORTHO05D001487 6.6e-06 54.7 70 41.4
AUR62004430 Chenopodium quinoa HOM05D006269 ORTHO05D001487 8.7e-06 54.3 88 31.8
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 8.7e-06 54.3 82 34.1
HanXRQChr14g0451421 Helianthus annuus HOM05D002685 ORTHO05D001487 8.7e-06 54.3 90 34.4


User provided reference genes

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