Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.8e-158 562.8 336 100.0
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 6.1e-114 414.8 325 78.8
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 4.3e-99 365.5 347 70.0
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.9e-86 323.6 318 69.5
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 9.2e-86 321.2 336 65.2
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 8.6e-84 314.7 327 69.7
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.0e-81 305.8 339 64.9
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.2e-80 304.3 329 64.1
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.4e-78 297.4 328 61.9
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.0e-77 292.0 331 58.6
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.9e-75 287.0 341 67.7
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 5.6e-75 285.4 341 67.2
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 4.7e-74 282.3 337 59.3
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 4.7e-74 282.3 335 60.9
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 6.8e-73 278.5 295 56.9
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 9.9e-72 274.6 337 59.3
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 2.2e-71 273.5 358 54.7
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 6.4e-71 271.9 342 59.9
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.4e-71 271.9 354 59.0
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.1e-70 271.2 343 58.6
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 2.7e-69 266.5 331 55.0
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.3e-68 264.2 342 55.8
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.7e-68 263.8 348 50.0
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 3.9e-68 262.7 341 54.0
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.9e-68 262.7 341 60.1
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 5.1e-68 262.3 350 54.6
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.9e-67 260.4 332 54.5
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 3.3e-67 259.6 337 57.9
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 5.6e-67 258.8 354 50.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 5.6e-67 258.8 329 58.4
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.6e-66 257.3 365 49.6
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.6e-66 256.1 367 46.6
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.4e-65 254.2 330 52.7
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.4e-65 253.4 330 52.7
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 3.1e-65 253.1 347 57.6
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 5.3e-65 252.3 347 57.1
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 6.9e-65 251.9 360 46.4
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.5e-64 250.8 341 55.7
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 2.0e-64 250.4 380 54.2
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.8e-64 248.8 344 53.5
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 3.2e-62 243.0 330 52.4
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 5.4e-62 242.3 353 50.1
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 7.1e-62 241.9 349 57.3
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 9.3e-62 241.5 337 47.2
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.6e-61 240.7 332 48.2
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 7.8e-61 238.4 334 50.3
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.3e-60 236.9 347 55.9
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 2.3e-60 236.9 357 47.1
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.1e-59 234.6 340 52.6
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.9e-59 233.8 343 46.9
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 4.3e-59 232.6 348 48.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.3e-58 231.1 328 51.5
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 2.1e-58 230.3 357 46.8
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 4.8e-58 229.2 342 56.1
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.1e-57 228.0 331 52.6
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 5.3e-57 225.7 330 44.5
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 9.0e-57 224.9 353 52.4
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 2.0e-56 223.8 321 56.4
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.0e-56 223.8 348 49.1
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 2.6e-56 223.4 334 51.2
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 2.6e-56 223.4 330 54.8
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.6e-56 223.4 352 52.0
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.4e-56 223.0 349 49.0
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.5e-56 222.6 338 53.0
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 5.8e-56 222.2 320 49.7
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 5.8e-56 222.2 340 51.5
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.2e-55 220.3 334 51.5
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.8e-55 219.5 330 55.5
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.4e-54 217.6 334 50.0
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-54 217.2 333 52.3
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.9e-54 217.2 338 53.0
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 2.4e-54 216.9 334 50.0
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 4.2e-54 216.1 343 46.1
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 9.3e-54 214.9 344 51.7
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 9.3e-54 214.9 334 50.9
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.1e-53 213.8 338 44.4
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 2.1e-53 213.8 364 47.5
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 2.7e-53 213.4 334 51.2
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 2.7e-53 213.4 320 48.4
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 2.7e-53 213.4 345 44.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 4.6e-53 212.6 353 47.0
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 7.9e-53 211.8 323 52.9
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 7.9e-53 211.8 332 51.2
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 7.9e-53 211.8 326 55.2
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-52 211.1 336 49.7
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.3e-52 211.1 245 49.8
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.8e-52 210.7 336 49.1
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.8e-52 210.7 326 50.3
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.3e-52 210.3 335 50.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.3e-52 210.3 335 50.7
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.3e-52 210.3 335 50.7
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 2.3e-52 210.3 342 47.4
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.3e-52 210.3 347 54.2
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.0e-52 209.9 347 49.6
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 3.9e-52 209.5 338 47.6
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 3.9e-52 209.5 338 54.4
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.1e-52 209.1 339 44.5
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 6.7e-52 208.8 329 51.1
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 7.4e-51 205.3 274 56.6
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-50 204.5 336 48.5
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.6e-50 204.1 292 53.4
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.6e-50 204.1 329 45.6
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 2.8e-50 203.4 343 47.2
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.1e-49 201.4 311 51.1
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.1e-49 201.4 311 51.1
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 2.4e-49 200.3 342 50.3
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.1e-49 199.9 346 53.5
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 3.1e-49 199.9 342 50.9
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.0e-47 194.9 317 42.6
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-47 194.5 346 53.2
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.9e-47 193.4 396 41.9
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.4e-46 191.0 322 39.8
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 7.1e-46 188.7 338 49.1
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.3e-44 184.5 406 42.6
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.8e-44 184.1 348 44.3
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.1e-43 181.4 336 42.6
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 2.5e-43 180.3 317 47.9
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 9.6e-43 178.3 347 42.1
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.1e-42 177.2 299 45.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 1.4e-41 174.5 298 46.0
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.4e-41 173.7 271 51.3
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 4.0e-41 172.9 278 47.1
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 2.2e-39 167.2 228 57.0
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 2.9e-39 166.8 337 45.4
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.1e-38 164.9 338 43.5
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 7.1e-38 162.2 244 57.8
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 9.3e-38 161.8 296 43.2
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 3.5e-37 159.8 159 57.2
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 6.7e-36 155.6 356 42.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.3e-35 153.3 169 53.3
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 7.4e-35 152.1 354 36.4
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.3e-34 151.4 188 50.0
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.6e-34 151.0 307 49.5
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.8e-34 150.2 339 41.0
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 4.1e-33 146.4 327 41.3
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 5.3e-33 146.0 336 38.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.4e-32 143.3 295 43.4
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.0e-31 141.7 156 51.9
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 5.0e-31 139.4 205 42.9
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.0e-31 139.4 294 46.9
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.9e-30 137.5 216 57.4
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.2e-29 134.8 230 40.4
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 4.6e-29 132.9 165 51.5
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.4e-28 131.3 363 38.3
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 1.5e-27 127.9 327 33.0
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.5e-27 127.9 290 37.9
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.3e-26 122.5 142 51.4
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 8.2e-26 122.1 156 50.6
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 6.5e-23 112.5 318 36.2
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.9e-22 110.9 326 34.7
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 7.0e-17 92.4 342 39.2
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 3.5e-16 90.1 151 41.1
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.5e-14 84.7 341 33.1
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.2e-12 76.3 92 56.5
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.1e-09 68.6 155 35.5
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 1.0e-07 62.0 63 52.4
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 1.3e-07 61.6 79 48.1


User provided reference genes

Program Settings