Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 1.2e-97 359.8 175 100.0
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 1.8e-85 319.3 175 88.6
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 1.8e-80 302.8 175 85.1
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 1.2e-76 290.0 176 83.5
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 1.2e-76 290.0 175 81.7
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 1.3e-75 286.6 175 80.0
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 4.2e-74 281.6 175 81.1
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 9.4e-74 280.4 175 78.9
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 5.0e-67 258.1 175 74.9
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 8.5e-67 257.3 179 75.4
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 8.5e-67 257.3 179 75.4
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 8.5e-67 257.3 175 74.9
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 8.0e-65 250.8 171 71.3
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 8.8e-64 247.3 176 72.2
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 2.0e-63 246.1 176 70.5
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 5.7e-63 244.6 176 69.3
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 7.4e-63 244.2 173 68.8
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 5.3e-61 238.0 175 66.9
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 5.3e-61 238.0 175 69.1
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 7.0e-61 237.7 172 69.2
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 7.0e-61 237.7 172 69.2
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 1.2e-60 236.9 175 66.9
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 1.6e-60 236.5 175 68.6
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 2.6e-60 235.7 172 68.0
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 3.5e-60 235.3 176 68.2
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 7.7e-60 234.2 179 65.4
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 2.2e-59 232.6 175 68.0
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 5.0e-59 231.5 178 67.4
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.1e-58 230.3 144 77.1
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 1.1e-58 230.3 144 77.1
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 2.5e-58 229.2 233 54.1
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 9.4e-58 227.3 169 65.7
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 9.4e-58 227.3 143 76.2
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 1.6e-57 226.5 175 66.9
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 2.7e-57 225.7 179 64.8
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 3.6e-57 225.3 186 65.6
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 5.2e-56 221.5 184 65.2
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 8.8e-56 220.7 123 84.6
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 1.2e-55 220.3 153 71.2
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 3.4e-55 218.8 204 57.4
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 7.5e-55 217.6 170 65.3
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 4.1e-53 211.8 126 78.6
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 4.1e-53 211.8 171 61.4
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 5.4e-53 211.5 177 62.1
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 9.1e-53 210.7 174 60.9
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 9.1e-53 210.7 174 61.5
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 9.1e-53 210.7 174 61.5
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 1.2e-52 210.3 174 61.5
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 1.2e-52 210.3 174 61.5
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 3.5e-52 208.8 174 60.9
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 5.9e-52 208.0 173 61.3
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 5.9e-52 208.0 176 60.2
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 7.7e-52 207.6 140 70.0
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.0e-51 207.2 168 60.7
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 3.8e-51 205.3 175 60.6
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 5.0e-51 204.9 178 60.7
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 6.5e-51 204.5 175 62.3
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 8.5e-51 204.1 174 60.9
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 1.1e-50 203.8 170 61.8
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 1.5e-50 203.4 171 60.2
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 1.9e-50 203.0 155 65.2
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 5.5e-50 201.4 127 74.8
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 7.2e-50 201.1 169 59.8
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 7.2e-50 201.1 169 60.9
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 1.2e-49 200.3 123 77.2
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 1.2e-49 200.3 148 66.2
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 1.6e-49 199.9 174 60.9
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 2.1e-49 199.5 175 58.3
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 2.3e-48 196.1 125 73.6
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 8.8e-48 194.1 125 70.4
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 5.7e-47 191.4 151 64.2
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 2.8e-46 189.1 153 60.8
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 8.3e-46 187.6 169 58.6
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 1.4e-45 186.8 125 72.0
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 2.4e-45 186.0 201 54.2
COL.COLO4_31826 Corchorus olitorius HOM05D007052 ORTHO05D008871 1.3e-43 180.3 120 70.8
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 1.3e-43 180.3 151 61.6
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 5.0e-43 178.3 120 71.7
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 1.5e-42 176.8 177 57.6
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 2.5e-42 176.0 120 69.2
Solyc02g081060.4 Solanum lycopersicum HOM05D007052 ORTHO05D008871 4.2e-42 175.3 120 69.2
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 4.7e-41 171.8 123 69.9
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 1.8e-40 169.9 120 66.7
AUR62021907 Chenopodium quinoa HOM05D007052 ORTHO05D008871 5.2e-40 168.3 173 51.4
Peaxi162Scf00178g00039 Petunia axillaris HOM05D007052 ORTHO05D008871 5.2e-40 168.3 127 66.1
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 5.7e-39 164.9 137 62.0
SMO118G0387 Selaginella moellendorffii HOM05D007052 ORTHO05D008871 1.3e-38 163.7 121 59.5
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 2.4e-37 159.5 127 64.6
Nn1g07250 Nelumbo nucifera HOM05D007052 ORTHO05D008871 1.5e-34 150.2 92 76.1
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 4.7e-33 145.2 115 59.1
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 6.8e-32 141.4 123 58.5
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 2.0e-31 139.8 123 57.7
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 7.5e-31 137.9 171 48.5
arahy.Tifrunner.gnm1.ann1.ZUMJ7A Arachis hypogaea HOM05D007052 ORTHO05D008871 1.1e-29 134.0 121 59.5
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 7.5e-23 111.3 90 62.2
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 2.9e-22 109.4 175 42.9
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 2.4e-21 106.3 90 58.9
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 7.3e-18 94.7 86 59.3
Cre07.g339000 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 2.8e-17 92.8 125 39.2
Cre01.g030350 Chlamydomonas reinhardtii HOM05D007052 ORTHO05D008871 4.9e-14 82.0 123 40.7
RcHm_v2.0_Chr5g0002331 Rosa chinensis HOM05D007052 ORTHO05D008871 4.9e-14 82.0 50 76.0
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 3.2e-13 79.3 87 54.0
PRCOL_00003846 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 4.1e-13 79.0 127 35.4
MCO13G382 Micromonas commoda HOM05D007052 ORTHO05D008871 4.6e-12 75.5 166 31.3
FAN25G3667 Fragaria x ananassa HOM05D007052 ORTHO05D008871 3.0e-11 72.8 44 75.0
MSTRG.7177 Avicennia marina HOM05D007052 ORTHO05D008871 1.9e-10 70.1 48 64.6
PRCOL_00004464 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 4.7e-09 65.5 119 31.1
PRCOL_00003373 Prasinoderma coloniale HOM05D007052 ORTHO05D008871 1.5e-07 60.5 127 32.3
MCO14G271 Micromonas commoda HOM05D007052 ORTHO05D008871 4.4e-07 58.9 123 32.5
Nitab4.5_0007209g0010 Nicotiana tabacum HOM05D007052 ORTHO05D008871 4.4e-07 58.9 39 66.7
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.2e-06 56.6 133 30.1
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 8.4e-06 54.7 133 29.3


User provided reference genes

Program Settings