Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 0.0e+00 2627.8 1414 100.0
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 0.0e+00 1841.6 1254 79.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 0.0e+00 1832.8 1384 75.2
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 0.0e+00 1760.3 1243 78.4
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 1729.1 1440 68.9
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 0.0e+00 1712.6 1440 68.5
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 0.0e+00 1668.3 1436 66.8
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 0.0e+00 1667.5 1443 66.4
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 0.0e+00 1640.6 1474 64.2
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 0.0e+00 1507.7 1437 64.0
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 0.0e+00 1490.7 1378 63.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 0.0e+00 1488.4 1424 62.6
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 0.0e+00 1479.2 1422 64.1
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 0.0e+00 1453.0 1411 62.5
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.4e-308 1063.5 1470 47.6
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 8.9e-308 1060.8 1470 47.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 6.2e-293 1011.5 1523 47.1
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 5.5e-289 998.4 1568 46.3
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 3.0e-279 966.1 1440 46.0
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 9.6e-278 961.1 1523 44.0
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.8e-276 956.8 1452 45.5
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 2.6e-275 953.0 1308 48.3
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.4e-273 947.2 1457 45.6
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 9.7e-270 934.5 1440 45.1
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.6e-269 933.7 1452 46.1
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.8e-268 930.2 1448 45.6
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.6e-267 926.4 1445 45.1
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 4.5e-267 925.6 1449 45.4
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.9e-265 920.2 1501 45.2
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.7e-261 907.1 1437 45.2
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 5.3e-260 902.1 1483 44.4
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 2.5e-257 893.3 1554 43.8
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 2.7e-256 889.8 1321 45.8
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 7.9e-256 888.3 1453 43.4
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 2.3e-255 886.7 1448 44.5
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.1e-254 884.4 1351 44.8
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 2.0e-254 883.6 1401 43.4
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.4e-252 877.5 1319 45.3
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.4e-252 877.5 1417 43.6
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.6e-251 874.0 1457 42.5
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 3.2e-249 866.3 1488 42.9
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.1e-236 824.7 640 75.0
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 4.5e-235 819.3 1300 43.4
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.2e-232 811.2 1366 42.7
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 3.4e-230 803.1 1220 44.0
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.3e-229 801.2 1341 42.1
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.7e-229 800.8 1424 42.5
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 2.4e-228 797.0 1287 42.8
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 8.0e-224 781.9 1205 45.9
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 9.8e-222 775.0 1301 42.4
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 4.1e-220 769.6 1182 45.4
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 3.5e-219 766.5 1199 45.7
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.3e-218 764.6 1268 43.3
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 3.3e-217 760.0 1254 43.3
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.2e-216 758.1 1277 42.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 6.4e-213 745.7 1176 45.1
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.2e-211 741.5 1243 42.6
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 6.0e-211 739.2 1430 38.7
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.3e-210 738.0 1263 41.8
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 4.7e-208 729.6 1311 42.5
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 8.3e-205 718.8 1244 42.4
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.1e-200 704.1 1311 39.9
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.3e-199 700.7 1230 41.7
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 8.9e-199 698.7 1451 37.5
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.2e-198 698.4 1312 39.8
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 3.4e-198 696.8 1263 42.1
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 3.2e-196 690.3 1264 40.0
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.2e-195 688.3 974 44.9
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.3e-194 684.9 1233 41.1
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-194 684.5 1260 40.7
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 3.0e-194 683.7 1281 39.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 3.3e-193 680.2 1273 40.3
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 9.6e-193 678.7 1386 39.5
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 1.8e-183 647.9 1203 40.6
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.6e-179 634.8 1281 38.7
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 1.0e-178 632.1 1173 41.3
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.1e-176 624.4 1415 36.1
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 6.2e-176 622.9 1256 38.7
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.7e-173 614.8 1217 40.2
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 2.7e-171 607.4 1205 39.9
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 4.3e-169 600.1 1482 35.8
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 4.0e-167 593.6 1215 40.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 2.6e-166 590.9 1390 35.7
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.7e-165 588.2 1206 39.1
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 1.4e-164 585.1 1215 38.3
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 6.0e-163 579.7 1218 39.5
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.0e-162 578.9 1212 38.7
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.6e-161 572.4 1156 38.3
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 2.8e-160 570.9 1220 38.6
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 2.4e-159 567.8 1266 36.3
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 3.1e-159 567.4 1209 38.0
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 3.1e-159 567.4 1209 38.0
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.5e-158 565.1 1198 38.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 4.5e-158 563.5 1198 38.2
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 2.7e-155 554.3 1231 36.8
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 8.7e-154 549.3 1250 37.4
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 6.9e-151 539.7 1172 38.9
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.0e-149 535.8 1129 37.6
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.7e-139 501.1 1183 35.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.2e-136 491.5 620 53.7
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.7e-131 474.6 603 48.6
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.6e-131 474.2 867 38.4
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.0e-114 419.5 989 34.2
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.0e-114 417.5 663 44.3
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 1.4e-111 409.1 624 47.1
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.0e-109 402.9 1221 33.7
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.1e-108 399.4 846 37.7
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 9.2e-95 353.2 511 44.2
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.2e-91 342.8 442 46.2
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 4.7e-91 340.9 667 39.6
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.2e-88 332.0 605 41.8
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 7.8e-86 323.6 497 44.7
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 3.9e-85 321.2 468 43.4
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 6.8e-82 310.5 806 35.0
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 2.1e-75 288.9 410 47.1
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 3.6e-75 288.1 591 38.4
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 4.7e-75 287.7 304 52.6
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 3.2e-63 248.4 270 51.9
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 5.8e-57 227.6 550 34.0
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 2.8e-51 208.8 497 34.0
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.0e-49 202.6 502 34.5
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 2.2e-48 199.1 843 27.4
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 3.8e-48 198.4 497 32.8
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.9e-44 186.0 152 57.9
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.9e-44 186.0 720 28.5
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 3.1e-42 178.7 599 30.7
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 4.1e-42 178.3 479 33.8
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 6.9e-42 177.6 368 36.4
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.0e-41 176.0 310 52.3
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 5.5e-39 167.9 461 31.7
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 8.8e-37 160.6 380 37.6
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.7e-35 155.2 256 40.2
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 8.2e-35 154.1 229 41.0
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 5.5e-31 141.4 263 46.0
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.8e-24 118.6 227 38.3
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 1.0e-21 110.5 405 27.4
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.1e-18 100.5 113 69.0
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.1e-18 98.6 531 28.6
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-14 87.0 124 41.1
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 4.7e-14 85.1 323 29.7
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.8e-13 80.9 182 32.4
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.2e-12 80.5 80 50.0
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.6e-09 70.1 63 58.7
BcaB01g03945 Brassica carinata HOM05D002890 ORTHO05D005855 5.9e-09 68.2 93 48.4
BcaC01g05871 Brassica carinata HOM05D002890 ORTHO05D005855 5.9e-09 68.2 93 48.4
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 4.7e-06 58.5 83 43.4
RcHm_v2.0_Chr5g0003101 Rosa chinensis HOM05D002890 ORTHO05D005855 4.7e-06 58.5 83 43.4


User provided reference genes

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